PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00274.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 672aa MW: 74787.4 Da PI: 6.3496

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00274.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	352	402	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Pahal.I00274.3 352 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 402 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	341	422	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-26	354	402	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.8E-24	570	654	No hit	No description
SuperFamily	SSF54277	7.61E-22	571	653	No hit	No description
SMART	SM00666	3.1E-22	573	656	IPR000270	PB1 domain
PROSITE profile	PS51745	21.818	573	656	IPR000270	PB1 domain
CDD	cd06407	1.92E-40	574	654	No hit	No description
Pfam	PF00564	7.2E-16	574	655	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MQCSQGKDVL LPGTPIPEEV DLRSTDVSSD THANVTDTSY RAVVPEIIDV LRTVCERHEL 60 PLAQTWIPCI CQAKRGSRHS DEKLKYCVST VDEACYVRDL AVKSFHQACS DHHLFRGEGV 120 VGRAFGTNEP CFSQDITSYS KAQYPLSHHA KLFSLRAAVA IRLRSIRTGS LDYVLEFFLP 180 VDCIESEEQR AMLNSLSITI QQTCYTLRVV SLKELVDEGS FETSTLTPAE FYDKPTHENL 240 DEVCSNIEVP ARTTSLGTSE EVSSWIASLV DAQSKGAKEM DGDLPFGFSK QEDEGFSVTA 300 GWHTSPVLRQ KGSIFSGFKQ HEEYEVKEPI CSRGPSPSNV DKTVEKRRTK MEKTVSLEEL 360 RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE 420 GTVQLSSLYE NFTKTTWSER ELQGDGNYPL SEQKGHLEPS VPDRQCEGRF TSHTSGSNSL 480 SPSCSQSSNS SHGCSSGSKS QQNGSAPQLA VKQEVLMEEN QSSTLLKAAS HAELQMFTEE 540 RPVTLPRSHS QMLLSEQKPV ENMSGMQKSK PDSLKIKAMY GEERCIFRLQ PSWGFEKLKE 600 EIVKRFSIAQ EMYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVR ILVNVNVQPV 660 LGPSFGQTGL S*

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MQCSQGKDVL LPGTPIPEEV DLRSTDVSSD THANVTDTSY RAVVPEIIDV LRTVCERHEL  60
PLAQTWIPCI CQAKRGSRHS DEKLKYCVST VDEACYVRDL AVKSFHQACS DHHLFRGEGV  120
VGRAFGTNEP CFSQDITSYS KAQYPLSHHA KLFSLRAAVA IRLRSIRTGS LDYVLEFFLP  180
VDCIESEEQR AMLNSLSITI QQTCYTLRVV SLKELVDEGS FETSTLTPAE FYDKPTHENL  240
DEVCSNIEVP ARTTSLGTSE EVSSWIASLV DAQSKGAKEM DGDLPFGFSK QEDEGFSVTA  300
GWHTSPVLRQ KGSIFSGFKQ HEEYEVKEPI CSRGPSPSNV DKTVEKRRTK MEKTVSLEEL  360
RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE  420
GTVQLSSLYE NFTKTTWSER ELQGDGNYPL SEQKGHLEPS VPDRQCEGRF TSHTSGSNSL  480
SPSCSQSSNS SHGCSSGSKS QQNGSAPQLA VKQEVLMEEN QSSTLLKAAS HAELQMFTEE  540
RPVTLPRSHS QMLLSEQKPV ENMSGMQKSK PDSLKIKAMY GEERCIFRLQ PSWGFEKLKE  600
EIVKRFSIAQ EMYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVR ILVNVNVQPV  660
LGPSFGQTGL S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797092.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2S3IUL5	0.0	A0A2S3IUL5_9POAL; Uncharacterized protein
STRING	Pavir.J25840.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-140	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00274.3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]