PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00274.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 927aa MW: 103056 Da PI: 5.5227

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00274.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.5e-28	607	657	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Pahal.I00274.1 607 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 657 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	596	677	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-26	609	657	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.4E-24	825	909	No hit	No description
SuperFamily	SSF54277	1.18E-21	826	908	No hit	No description
SMART	SM00666	3.1E-22	828	911	IPR000270	PB1 domain
PROSITE profile	PS51745	21.818	828	911	IPR000270	PB1 domain
Pfam	PF00564	1.1E-15	829	910	IPR000270	PB1 domain
CDD	cd06407	7.52E-40	829	909	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MEQPAARKDE DALLGYAVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGA GAPPGACFSP 60 LFDICSTTTT ATPPAPAGED DRDDAERERA DRPEADAAAP PRRAWLFQPG QEVAATVKER 120 LRRALERIAS LSQTQPGELL AQVWVPTLIG DRQVLTTCGQ PFWLDSRNQR LANYRSVSMK 180 YQFSADESAR AELGLPGRVF VGRVPEWTPD VRYFSTEEYP RVRHAQSLDI RGSVALPIFE 240 PRTRACLGVI ELVMTTQKIN YNAEVENICS ALKEVDLRST DVSSDTHANV TDTSYRAVVP 300 EIIDVLRTVC ERHELPLAQT WIPCICQAKR GSRHSDEKLK YCVSTVDEAC YVRDLAVKSF 360 HQACSDHHLF RGEGVVGRAF GTNEPCFSQD ITSYSKAQYP LSHHAKLFSL RAAVAIRLRS 420 IRTGSLDYVL EFFLPVDCIE SEEQRAMLNS LSITIQQTCY TLRVVSLKEL VDEGSFETST 480 LTPAEFYDKP THENLDEVCS NIEVPARTTS LGTSEEVSSW IASLVDAQSK GAKEMDGDLP 540 FGFSKQEDEG FSVTAGWHTS PVLRQKGSIF SGFKQHEEYE VKEPICSRGP SPSNVDKTVE 600 KRRTKMEKTV SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS 660 LKKLQMVIDS VHGAEGTVQL SSLYENFTKT TWSERELQGD GNYPLSEQKG HLEPSVPDRQ 720 CEGRFTSHTS GSNSLSPSCS QSSNSSHGCS SGSKSQQNGS APQLAVKQEV LMEENQSSTL 780 LKAASHAELQ MFTEERPVTL PRSHSQMLLS EQKPVENMSG MQKSKPDSLK IKAMYGEERC 840 IFRLQPSWGF EKLKEEIVKR FSIAQEMYVD LKYLDDESEW VLLTCDADLL ECIDVYKSSS 900 AQTVRILVNV NVQPVLGPSF GQTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MEQPAARKDE DALLGYAVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGA GAPPGACFSP  60
LFDICSTTTT ATPPAPAGED DRDDAERERA DRPEADAAAP PRRAWLFQPG QEVAATVKER  120
LRRALERIAS LSQTQPGELL AQVWVPTLIG DRQVLTTCGQ PFWLDSRNQR LANYRSVSMK  180
YQFSADESAR AELGLPGRVF VGRVPEWTPD VRYFSTEEYP RVRHAQSLDI RGSVALPIFE  240
PRTRACLGVI ELVMTTQKIN YNAEVENICS ALKEVDLRST DVSSDTHANV TDTSYRAVVP  300
EIIDVLRTVC ERHELPLAQT WIPCICQAKR GSRHSDEKLK YCVSTVDEAC YVRDLAVKSF  360
HQACSDHHLF RGEGVVGRAF GTNEPCFSQD ITSYSKAQYP LSHHAKLFSL RAAVAIRLRS  420
IRTGSLDYVL EFFLPVDCIE SEEQRAMLNS LSITIQQTCY TLRVVSLKEL VDEGSFETST  480
LTPAEFYDKP THENLDEVCS NIEVPARTTS LGTSEEVSSW IASLVDAQSK GAKEMDGDLP  540
FGFSKQEDEG FSVTAGWHTS PVLRQKGSIF SGFKQHEEYE VKEPICSRGP SPSNVDKTVE  600
KRRTKMEKTV SLEELRKHFA GSLKEAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVGHS  660
LKKLQMVIDS VHGAEGTVQL SSLYENFTKT TWSERELQGD GNYPLSEQKG HLEPSVPDRQ  720
CEGRFTSHTS GSNSLSPSCS QSSNSSHGCS SGSKSQQNGS APQLAVKQEV LMEENQSSTL  780
LKAASHAELQ MFTEERPVTL PRSHSQMLLS EQKPVENMSG MQKSKPDSLK IKAMYGEERC  840
IFRLQPSWGF EKLKEEIVKR FSIAQEMYVD LKYLDDESEW VLLTCDADLL ECIDVYKSSS  900
AQTVRILVNV NVQPVLGPSF GQTGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797092.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2S3IUM4	0.0	A0A2S3IUM4_9POAL; Uncharacterized protein
STRING	Si034133m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00274.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]