PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00261.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 286aa MW: 30588.9 Da PI: 7.7252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00261.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	158	201	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri ++ +eL +l+P K++ ae+Le+A +++k Lq Pahal.I00261.1 158 AAARQRRKRISEKTAELSRLIPGgH------KMNTAEMLEEAARHVKLLQ 201 677*****************955......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.944	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-9	155	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-11	155	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-9	157	204	No hit	No description
Pfam	PF00010	9.6E-6	158	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MALSFHPTTA PLFGHLPAAD MSFLQDVHPE ITDALLGFVY DPLDPANAAL DDLLDLPPHD 60 DAAFLRPIHG DGDAKVERHC AKRQRACGHD AWRGLARIDS GQQSNGGGNR QVPALPELPN 120 EFVLALPPPP PPAPPQLPEP AAYAKKATGN VSQSVQSAAA RQRRKRISEK TAELSRLIPG 180 GHKMNTAEML EEAARHVKLL QAQVGVLALM RTVGSIENEK APSMAQEQMH ALLVRGSVQE 240 RLAAEGKCLV PRKLVDAVAR DSSVKSNALV SRDLGRFVAS LQAGQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	1e-151	uncharacterized protein LOC101765829
TrEMBL	A0A2S3IUN5	0.0	A0A2S3IUN5_9POAL; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	4e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00261.1