PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00254.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 368aa MW: 39859.6 Da PI: 9.6803

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00254.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7e-32	25	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR Pahal.I00254.1 25 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 78 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.653	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-31	21	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-16	23	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	25	78	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-10	26	77	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MTMVRTVVGR ERSGGVRQYN RSKVPRLRWT PDLHHCFVHA IHKLGGQDKA TPKRVLQLMG 60 VGGLTISHVK SHLQMYRNMR NDLGMQGSTM QQVPRPDQEH LYGGSGMHME LCSQDTQQQQ 120 WDHECDGPCC CICRSPKPRK EPMLPLLLHP QLKRTETRRE REEEEDYGGN ASPKSLLRGP 180 GPGICEGDGS SPPRLYCALA AAAGGYNYMR IMQAAMGGMA AAPGAPPPHA EPEVEPLQGA 240 GIKRQRHEAR PAAACGGHAA PAPPPNKLFT FLGFVVAPGP AACRRDHPFE IASRTRVPRT 300 ANRLPCSVDT PSNKAVVRRG ANNPPPSRAV LHARRRGGQP AVADDVVGGE PDQPRPVAVH 360 VELTSAA*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MTMVRTVVGR ERSGGVRQYN RSKVPRLRWT PDLHHCFVHA IHKLGGQDKA TPKRVLQLMG  60
VGGLTISHVK SHLQMYRNMR NDLGMQGSTM QQVPRPDQEH LYGGSGMHME LCSQDTQQQQ  120
WDHECDGPCC CICRSPKPRK EPMLPLLLHP QLKRTETRRE REEEEDYGGN ASPKSLLRGP  180
GPGICEGDGS SPPRLYCALA AAAGGYNYMR IMQAAMGGMA AAPGAPPPHA EPEVEPLQGA  240
GIKRQRHEAR PAAACGGHAA PAPPPNKLFT FLGFVVAPGP AACRRDHPFE IASRTRVPRT  300
ANRLPCSVDT PSNKAVVRRG ANNPPPSRAV LHARRRGGQP AVADDVVGGE PDQPRPVAVH  360
VELTSAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	26	80	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	26	80	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	26	80	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	26	80	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068910	1e-110	BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792174.1	0.0	uncharacterized protein LOC112873442
TrEMBL	A0A2T8I6K3	0.0	A0A2T8I6K3_9POAL; Uncharacterized protein
STRING	Pavir.Ia04483.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7610	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.I00254.1