PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00191.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 600aa    MW: 63557.7 Da    PI: 6.8407
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00191.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-093613981954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Pahal.I00191.1 361 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 398
                     664459******************************88 PP
2BELL87.51.4e-28225293472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     elq+ k kL  +leeVd+rY++y+eq++ +++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i+ q+
  Pahal.I00191.1 225 ELQRLKDKLYIMLEEVDRRYRRYCEQMRSLAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGIVAQL 293
                     89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-44148291IPR006563POX domain
PfamPF075262.9E-44154289IPR006563POX domain
PROSITE profilePS5007112.05339402IPR001356Homeobox domain
CDDcd000863.74E-12342403No hitNo description
SMARTSM003896.6E-9342406IPR001356Homeobox domain
SuperFamilySSF466892.01E-17343409IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-28345408IPR009057Homeodomain-like
PfamPF059207.9E-18359398IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAAADAA AMEEGAPELY GLHADMEFLA MRGGLPAMPA AAHGHGHSKA  60
VLDDAGPEGG STNAGTMQFL SAGGHHQQQP SQAQGPLSLS LCRPDGGGGV GLTLHEHLGG  120
SSRHHQQQPP PASWMQHDYS APTQGTQHAA AWHLRSSRFL LPAQQLLQEF CSLPVDSAAK  180
NKRAKQASTA KPSSQQQQED GGGEGSSSSA SWAPSPQIQA MNALELQRLK DKLYIMLEEV  240
DRRYRRYCEQ MRSLAGGFEA VAGERAAAAY TALASRTISR HFRSLRDGIV AQLQAARKAL  300
GEKDVSVPGM TRGDTPRLRV LDQCIRQQKA LSQAGMMESH PWRPQRGLPE RAVTILRAWL  360
FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYVE EMKDGQQQDG  420
GGASAGQQIS TNPNPSISSE AADGGDKGVD RKPTRAQLMH DAGSLASVVN IGGAGAGAGV  480
SNLGIMDHLD FDSYGAGDQQ QAGGFGGVSL TLGLQQHDSH DGGGVNIAFG APPPPAHHHH  540
HGGAAGYLFA TAGGQQVMDS GVHPGPHAQF GAAGGIDSEA QEHYRSLGAG FHLLRDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17348405158Homeobox protein Meis1
4xrs_B7e-17348405158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579620.0EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793662.10.0homeobox protein BEL1 homolog
RefseqXP_025793663.10.0homeobox protein BEL1 homolog
RefseqXP_025793664.10.0homeobox protein BEL1 homolog
RefseqXP_025793665.10.0homeobox protein BEL1 homolog
RefseqXP_025793666.10.0homeobox protein BEL1 homolog
RefseqXP_025793667.10.0homeobox protein BEL1 homolog
RefseqXP_025793668.10.0homeobox protein BEL1 homolog
TrEMBLA0A2S3IUU80.0A0A2S3IUU8_9POAL; Uncharacterized protein
STRINGPavir.Ib00072.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-82TALE family protein