PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02592.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 504aa MW: 59017.9 Da PI: 8.232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02592.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.3	9e-12	52	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek...dgkw 76 +f n+YA++vGFs+r+s+++ ++e k +fvC+keg+ ++ k++ +++ ++ ++++ + + k k+ek +kw Pahal.H02592.1 52 EFHNSYAERVGFSIRTSTTRLLYLTREQNKVQFVCNKEGRGRKVKEEqgtaasdesnydeddsKSEYNNDGSVKKKKLDGGRKRKREKnliADKW 146 699***************99999999********999998899*****9987644444555666666666666666665689* PP FAR1 77 evtkleleHnHela 90 +v+ + +HnHel+ Pahal.H02592.1 147 HVIYFAPDHNHELV 160 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-9	52	160	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.939	373	409	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
TEEATAVGGG VVEDTVEEVL EDVVQEVVEE VRLTPPMPYT SLTFSTKQEA REFHNSYAER 60 VGFSIRTSTT RLLYLTREQN KVQFVCNKEG RGRKVKEEQG TAASDESNYD EDDSKSEYNN 120 DGSVKKKKLD GGRKRKREKN LIADKWHVIY FAPDHNHELV MKLSLKKFLQ SHKGIPKEEK 180 DFIALLHGCN LSTERIMQLM NETEKYKDVQ ETLDYFRELE QEDPKFFHKI KLDVEHRRLY 240 GMQSSSVPAY YMHCFYPFLQ STQRSEVFNA VLKKYVNPNM SVLHFVRQYQ KIQHKCLVAE 300 DGQDFRTDDR ERRRWSRYPI ERHASTVYTK NLFYRFSKEF EKTAEYDVKL EGQFQYWLLP 360 NNIFVYGYGK RNYLVTALED EKNYYCECSK FDRDGMLCCH IMKRYILKRW TQEAVPDNEG 420 AATNAHVQAD FIARGMPLNN KKTMWFTNLS TAFANLAVEG CASKEAYTIM DNHIRLMRSE 480 VDEMKKKKKN SAQRGAQISS ICP*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

TEEATAVGGG VVEDTVEEVL EDVVQEVVEE VRLTPPMPYT SLTFSTKQEA REFHNSYAER  60
VGFSIRTSTT RLLYLTREQN KVQFVCNKEG RGRKVKEEQG TAASDESNYD EDDSKSEYNN  120
DGSVKKKKLD GGRKRKREKN LIADKWHVIY FAPDHNHELV MKLSLKKFLQ SHKGIPKEEK  180
DFIALLHGCN LSTERIMQLM NETEKYKDVQ ETLDYFRELE QEDPKFFHKI KLDVEHRRLY  240
GMQSSSVPAY YMHCFYPFLQ STQRSEVFNA VLKKYVNPNM SVLHFVRQYQ KIQHKCLVAE  300
DGQDFRTDDR ERRRWSRYPI ERHASTVYTK NLFYRFSKEF EKTAEYDVKL EGQFQYWLLP  360
NNIFVYGYGK RNYLVTALED EKNYYCECSK FDRDGMLCCH IMKRYILKRW TQEAVPDNEG  420
AATNAHVQAD FIARGMPLNN KKTMWFTNLS TAFANLAVEG CASKEAYTIM DNHIRLMRSE  480
VDEMKKKKKN SAQRGAQISS ICP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	RKRKREK
2	132	139	RKRKREKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679997.1	1e-139	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2T7D5A3	0.0	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.Ca02446.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.H02592.1