PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 734aa MW: 82494.1 Da PI: 6.945 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 388.6 | 6.9e-119 | 358 | 729 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+av+++d + a++lL+++++++ +gd +qRla++f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++sh Pahal.H02567.1 358 LRTILIHCAQAVAADDRRTANELLKQIRHHSKLNGDGTQRLAHCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLSH 449 5789************************************************************999999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ Nq+Il+ ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++A+++gvpfe++ +a+++e+ Pahal.H02567.1 450 FLSNQTILNMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAKKFGVPFEYQG-IASKWET 543 *********************************************************9*****************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ +r+ Pahal.H02567.1 544 IRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDAQRA 638 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++ +++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ Pahal.H02567.1 639 LIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQELVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 729 **************************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.181 | 332 | 709 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-116 | 358 | 729 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MGLDNTYGEL SGMFCGGLSY DGYTDHSSSS DYFRFSDPLP AVVPHMVAEP HSNPSSISRA 60 NTETDNPEDW EFISDESLNY ISRMLLEEDI DEKVNMYQAE SAALRAAAKP FYDILGHKFP 120 PSPDHQPIPW SVESPSESGS NSCTQSVAST VTSSSIGGAV DSNRRYDVGG REQLEAYGGL 180 CGQSSQPLVG PPRDACSAVG VLEDPLITNG RIPEYLFESL PTWDFRRGIE EAQKFLPVSN 240 KLVIDLESSA VARPQEARKD ASSNARKANV LNAKKNRQSE DLDLMEGRNI KQSAFCSDEP 300 DWIEMFDDLL RQTEKKATDL RELMRNEASK NSQVTQTKGP SGPRTRGRKP TKKDVVDLRT 360 ILIHCAQAVA ADDRRTANEL LKQIRHHSKL NGDGTQRLAH CFADGLEARL AGTGSQLYHK 420 LVAKRTTASD MLKAYHLYLA ACPFKRLSHF LSNQTILNMT KNASKVHIID FGIYFGFQWP 480 CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYAKKFGV PFEYQGIASK 540 WETIRVEDLK VGKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQVN PAIFIHGIVN 600 GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDAQRALI ERDLFGREAL NVIACEGSDR 660 VERPETYKQW QVRNLRAGFV QSPLNQELVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR 720 IIYAISTWKP KNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-50 | 362 | 729 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727971 | 0.0 | KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794111.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A2S3IRY1 | 0.0 | A0A2S3IRY1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32327.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02567.1 |