PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02567.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 734aa    MW: 82494.1 Da    PI: 6.945
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02567.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.66.9e-1193587291374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+av+++d + a++lL+++++++  +gd +qRla++f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ ++sh
  Pahal.H02567.1 358 LRTILIHCAQAVAADDRRTANELLKQIRHHSKLNGDGTQRLAHCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLSH 449
                     5789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ Nq+Il+ ++++++vHiiDf+i  G+QWp+L++ L++R++gpp lRiTg++ p++g   +e++eetg+rLa++A+++gvpfe++  +a+++e+
  Pahal.H02567.1 450 FLSNQTILNMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAKKFGVPFEYQG-IASKWET 543
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le+++pr++ +r+
  Pahal.H02567.1 544 IRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDAQRA 638
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++ +++ak  ++ ++ + + ++e+sg+l++gWk+r ++++S W+
  Pahal.H02567.1 639 LIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQELVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 729
                     **************************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.181332709IPR005202Transcription factor GRAS
PfamPF035142.4E-116358729IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGLDNTYGEL SGMFCGGLSY DGYTDHSSSS DYFRFSDPLP AVVPHMVAEP HSNPSSISRA  60
NTETDNPEDW EFISDESLNY ISRMLLEEDI DEKVNMYQAE SAALRAAAKP FYDILGHKFP  120
PSPDHQPIPW SVESPSESGS NSCTQSVAST VTSSSIGGAV DSNRRYDVGG REQLEAYGGL  180
CGQSSQPLVG PPRDACSAVG VLEDPLITNG RIPEYLFESL PTWDFRRGIE EAQKFLPVSN  240
KLVIDLESSA VARPQEARKD ASSNARKANV LNAKKNRQSE DLDLMEGRNI KQSAFCSDEP  300
DWIEMFDDLL RQTEKKATDL RELMRNEASK NSQVTQTKGP SGPRTRGRKP TKKDVVDLRT  360
ILIHCAQAVA ADDRRTANEL LKQIRHHSKL NGDGTQRLAH CFADGLEARL AGTGSQLYHK  420
LVAKRTTASD MLKAYHLYLA ACPFKRLSHF LSNQTILNMT KNASKVHIID FGIYFGFQWP  480
CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYAKKFGV PFEYQGIASK  540
WETIRVEDLK VGKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQVN PAIFIHGIVN  600
GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDAQRALI ERDLFGREAL NVIACEGSDR  660
VERPETYKQW QVRNLRAGFV QSPLNQELVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR  720
IIYAISTWKP KNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-503627298375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279710.0KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794111.10.0scarecrow-like protein 9
TrEMBLA0A2S3IRY10.0A0A2S3IRY1_9POAL; Uncharacterized protein
STRINGPavir.J32327.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein