PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02471.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 407aa MW: 42732.8 Da PI: 5.6278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02471.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	198	244	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Pahal.H02471.1 198 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 244 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-11	198	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	199	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	199	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.12E-5	208	247	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.3E-4	282	342	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGGHGDHHHQ EVGVLVDDDD EELEQHQARV CGGATSGVVE QGAGDAGGGQ EAAAGMVFEA 60 SSSVGSVSAT MAQPQILGWP TPPPAPPQQQ LHHHHHNVGG GQAPFFPLLP PLPPQPSPPP 120 PFLADFYTRR ALQFAYDHHH SGGASTSSDP LGLGGLYMGH HGGAGMMMPP PFASSPFGDF 180 GRMTAQEIMD AKALAASKSH SEAERRRRER INAHLARLRS LLPNTTKTDK ASLLAEVIQH 240 VKELKRQTSE ITEEACPLPT ESDELTVDAS SDEDGRLVVR ASLCCDDRAD LLPDLIRALK 300 ALRLRALKAE ITTLGGRVKN VLVITGDGTA AGCEGTVDDD QQEEAAAPMS PQHTVASIQE 360 ALRAVMERTA SAAAEEPGAA PSGAGAAGLK RQRTTSLSAI LENRSI*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGGHGDHHHQ EVGVLVDDDD EELEQHQARV CGGATSGVVE QGAGDAGGGQ EAAAGMVFEA  60
SSSVGSVSAT MAQPQILGWP TPPPAPPQQQ LHHHHHNVGG GQAPFFPLLP PLPPQPSPPP  120
PFLADFYTRR ALQFAYDHHH SGGASTSSDP LGLGGLYMGH HGGAGMMMPP PFASSPFGDF  180
GRMTAQEIMD AKALAASKSH SEAERRRRER INAHLARLRS LLPNTTKTDK ASLLAEVIQH  240
VKELKRQTSE ITEEACPLPT ESDELTVDAS SDEDGRLVVR ASLCCDDRAD LLPDLIRALK  300
ALRLRALKAE ITTLGGRVKN VLVITGDGTA AGCEGTVDDD QQEEAAAPMS PQHTVASIQE  360
ALRAVMERTA SAAAEEPGAA PSGAGAAGLK RQRTTSLSAI LENRSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797182.1	0.0	transcription factor bHLH30-like
Swissprot	Q9S7Y1	4e-72	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2T8I5G8	0.0	A0A2T8I5G8_9POAL; Uncharacterized protein
STRING	Si039730m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H02471.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]