PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02465.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 529aa MW: 61471.5 Da PI: 8.0386

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02465.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	5.6e-09	82	119	53	90
FAR1 53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++a+ rtgCka +k + +++g+w v+k+el+HnH la Pahal.H02465.1 82 SSHATIRTGCKALIKFSVSREGVWTVQKIELDHNHVLA 119 678899*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-6	82	119	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-12	243	290	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	449	487	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-5	460	479	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-6	462	489	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MTQNNESMVM EAVADPHTSS LSVGANAQVD DDMVVDKDGP PVIVPKVGIS FASESDAYEM 60 YNTYAGMIGF SIRKSIIKQT GSSHATIRTG CKALIKFSVS REGVWTVQKI ELDHNHVLAT 120 PKTKHMLRSQ RHVIDADRQL IAQIREAGMR PMQIYEFMKQ FYGGADKVPF LRMDCNNEIG 180 RERNKYLESN DAQTLLEYLK NKQIEDPAFF YAMEIDKQDG RIANFFWADG QSIMDYACFG 240 DAVSFDTTFQ TNKFEMPFAP LLGTNHHKQT IIFGAALLFN ETIESFVWLC VYEDRSEEFF 300 TKKWNKLLTK YDLEENSWLL NLYDLRRKWA AVYPDMTTTQ KSEGMNNVFK KRFRRKLGIS 360 ELLVECDKFF ASLRENELDE DFQSLIKIPV NYISNLPLLK TATESYTRRM YAKFEVEFRK 420 QHEYSCSCKL LQTEGSISTF IVTHMYSDYG ATVVFNIADM TITCSCRMFE SIGILCKHTF 480 KVFNKNDIFI LPSQYILNRW IKYAKRGYYK SYIRKLNSFT RACFWFRW*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MTQNNESMVM EAVADPHTSS LSVGANAQVD DDMVVDKDGP PVIVPKVGIS FASESDAYEM  60
YNTYAGMIGF SIRKSIIKQT GSSHATIRTG CKALIKFSVS REGVWTVQKI ELDHNHVLAT  120
PKTKHMLRSQ RHVIDADRQL IAQIREAGMR PMQIYEFMKQ FYGGADKVPF LRMDCNNEIG  180
RERNKYLESN DAQTLLEYLK NKQIEDPAFF YAMEIDKQDG RIANFFWADG QSIMDYACFG  240
DAVSFDTTFQ TNKFEMPFAP LLGTNHHKQT IIFGAALLFN ETIESFVWLC VYEDRSEEFF  300
TKKWNKLLTK YDLEENSWLL NLYDLRRKWA AVYPDMTTTQ KSEGMNNVFK KRFRRKLGIS  360
ELLVECDKFF ASLRENELDE DFQSLIKIPV NYISNLPLLK TATESYTRRM YAKFEVEFRK  420
QHEYSCSCKL LQTEGSISTF IVTHMYSDYG ATVVFNIADM TITCSCRMFE SIGILCKHTF  480
KVFNKNDIFI LPSQYILNRW IKYAKRGYYK SYIRKLNSFT RACFWFRW*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-64	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.H02465.1