PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25079.7 Da PI: 8.8892 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 40 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv+a + ++ W Ia+ ++ +Rt+kq+k++w+ y Pahal.H02376.1 40 RLDWTIAEEEKLVHAWVYHSNDsitgnnqiglsFWGQIAEIFNstaepsCRRTAKQLKDHWNVY 103 789**********************************************99***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.272 | 35 | 104 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 36 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.77E-5 | 39 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-5 | 41 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00833 | 43 | 103 | No hit | No description |
Pfam | PF14303 | 1.4E-6 | 148 | 220 | IPR029466 | No apical meristem-associated, C-terminal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
PPPYGPYPPP PHAAPTVPSP VSVESQNEGA GATEPKRPKR LDWTIAEEEK LVHAWVYHSN 60 DSITGNNQIG LSFWGQIAEI FNSTAEPSCR RTAKQLKDHW NVYNREVTLF NGYYIQEERV 120 RQSGADDAMV MEGAMARYEN DPKVTTAFKR HHWWRAVRHE PKWAAKHGPG GGSDVSSKRT 180 RLGVSGEYSS GGTEDTEEDN ETRPIGRDRA KAAKRKEKAK GKES* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670977.1 | 8e-91 | ribonuclease 3 | ||||
TrEMBL | A0A2T8I2M0 | 1e-132 | A0A2T8I2M0_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G369993_P01 | 9e-95 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02376.1 |