PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02372.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 252aa MW: 27694.1 Da PI: 6.3661

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02372.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	222	244	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +F+++ ++ H+++H Pahal.H02372.1 222 YTCKLCNATFPTPQIYHDHMSLH 244 9*******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	224	244	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSFNQSDDTI SPLHQELRGK TTMPTLSSSV PNAHAPKQPN MLPTNDHSFQ RYYSNIDAPP 60 PQSHPVFTQP PPTSTITSAG LIQSPAENEQ ELMRTFLTIP VGKFLSVDER VQVLSMEPPS 120 ITSLLQGDKT AILHAHLDIV GALDLGPIFQ DPTSDIPKEK EMHKPLGSSS SHGDPYEKMP 180 YVKPTYFGQS PMSSHVQRDG NSNYAIGAAM NSAFEFSEVQ RYTCKLCNAT FPTPQIYHDH 240 MSLHNKGMSS N*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	2e-65	uncharacterized protein LOC8060818
TrEMBL	A0A2S3HUS9	0.0	A0A2S3HUS9_9POAL; Uncharacterized protein
STRING	Pavir.Ea00985.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Pahal.H02372.1