PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02285.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 528aa    MW: 56333.1 Da    PI: 6.7362
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02285.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.5e-14138197155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pahal.H02285.1 138 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 197
                     57*******************666664478446*************************98 PP
2AP247.25.5e-15240291155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.H02285.1 240 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 291
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-17138207IPR016177DNA-binding domain
CDDcd000183.29E-20138207No hitNo description
PfamPF008472.8E-11138197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-15139207IPR001471AP2/ERF domain
PROSITE profilePS5103218.966139205IPR001471AP2/ERF domain
SMARTSM003804.2E-29139211IPR001471AP2/ERF domain
PRINTSPR003672.3E-6140151IPR001471AP2/ERF domain
CDDcd000182.93E-23240301No hitNo description
SuperFamilySSF541717.19E-18240301IPR016177DNA-binding domain
PfamPF008476.9E-10240291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18241300IPR001471AP2/ERF domain
SMARTSM003801.8E-33241305IPR001471AP2/ERF domain
PROSITE profilePS5103219.045241299IPR001471AP2/ERF domain
PRINTSPR003672.3E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGAAAAD DILPPLPPPR GDEADAEPKL EDFLGLQGPA AAVAGRPFAG  60
SGGGASSIGL SMIKNWLRSQ PAPGPTGADS MALAAVEAAS TDGSGKVADG AVSDAAVVDA  120
AQQRKAAAAV DTFGQRTSIY RGVTKHRWTG RYEAHLWDNS CRREGQTRKG RQVYLGGYDK  180
EEKAARAYDL AALKYWGTTT TTNFPMSNYE NELEEMKHMS RQEYVASLRR KSSGFSRGAS  240
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  300
SRYNVKSIME SSALPVGGTT KRLKDVPDQS DMGMNSNVAD SAGHMTATKL LTDGIGSYGH  360
ENYGYSGWSA SAMTPIPLQF SNCHDHSRLW CKPEHDSAVV AAAHNLHHLQ HFPDPGGTHN  420
FFHPSPGQDV TGVTNVSSPS VDSNSFLYSG DVGYHGAMGG GYAMPVATLV DSNHAASGYG  480
VEEGTSDLYS GRNLYYLSQA SPGTNTGKAD AYEQQGVGYE SWVPSVR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827983.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-137BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2S3IE310.0A0A2S3IE31_9POAL; Uncharacterized protein
STRINGPavir.Hb01059.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-124AP2 family protein