PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 18819.8 Da PI: 10.9354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.1 | 5e-11 | 33 | 82 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+a e+Er RR+++ ++eL llP + ++ Ka iLe+A+ Y+ L Pahal.H02277.1 33 QRQAMVEIERARRRHMSRLYAELGALLPDL----PPRAPKARILEEAIAYVGAL 82 699999***********************6....389*************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-11 | 31 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-10 | 31 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.084 | 32 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.38E-9 | 32 | 83 | No hit | No description |
Pfam | PF00010 | 2.4E-8 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-8 | 38 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd02116 | 0.00259 | 127 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAAEHPLALS LAGGRTKGSP AGTTTVALAP PEQRQAMVEI ERARRRHMSR LYAELGALLP 60 DLPPRAPKAR ILEEAIAYVG ALRGTVAKLE APGAVEGAGR RTAAVAAEVL AAEKASCFAA 120 RLPAARRPGA LTRVLEVFRR YGVPVLAATV TSNAGEAAVT VTTGAVAPSV VEGIKADISR 180 SIA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818588.1 | 1e-121 | uncharacterized protein LOC112894950 | ||||
TrEMBL | A0A2S3HVB1 | 1e-120 | A0A2S3HVB1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01569.1.p | 1e-99 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-10 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02277.1 |