PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02225.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 360aa    MW: 39381.8 Da    PI: 10.0579
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02225.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.61.2e-072292751763
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     A+rsR RK+++i+eLe +v++L++e  +   e+e l+++   l+ e+
  Pahal.H02225.2 229 AQRSRVRKLQYIAELEGRVQALQSEGVEVSAEMEFLTQQNIMLDLEN 275
                     89*************************99999999999887766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-7218277IPR004827Basic-leucine zipper domain
CDDcd147031.45E-14219269No hitNo description
SuperFamilySSF579592.25E-6228271No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-5229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMANAKLQKQ ALLPPRSPFP TAAAGAPSPY ADRGPIARPQ GAAAHPRHGH GHHQRTSSES  60
FIEEQPPSWL DDLLNEPETP AARQHGRAGH RRSSSDSFAL FDGAAAGASA YANGFEGMGG  120
GGGQPAPWGG VQEYYAKPGS FGRAHGRPWE QGMPNLAGFR HGGGLPMPTK DKVGGHHGPP  180
NTLRDHNHGM DKRTPVDAGH DQKVGVKEGV PPKHAQSEAD NKRAKQQYAQ RSRVRKLQYI  240
AELEGRVQAL QSEGVEVSAE MEFLTQQNIM LDLENKALKQ RLESLTQEQL IKRFQQEMFE  300
REIGRLRSLY QQQQQQQQQQ APALVRSNSR DLDAQFANLS LKHKDPNSGR DALSGPLRT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751020.0EU975102.1 Zea mays clone 469036 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828158.10.0uncharacterized protein At4g06598-like
RefseqXP_025828159.10.0uncharacterized protein At4g06598-like
TrEMBLA0A2S3IDQ30.0A0A2S3IDQ3_9POAL; Uncharacterized protein
STRINGPavir.Ha01130.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-46bZIP family protein