PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02111.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 271aa    MW: 29674.1 Da    PI: 10.5451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02111.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   Pahal.H02111.1 20 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65
                     899*****************************.***********996 PP
2Myb_DNA-binding60.63.3e-1973116247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++w+ +
   Pahal.H02111.1  73 RPFTEEEEERLLNAHRAHGNK-WALIARLFP-GRTDNAVKNHWHVV 116
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1161566IPR017930Myb domain
SuperFamilySSF466891.68E-3018113IPR009057Homeodomain-like
SMARTSM007172.1E-141968IPR001005SANT/Myb domain
PfamPF002498.2E-172065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-272173IPR009057Homeodomain-like
CDDcd001671.55E-142364No hitNo description
PROSITE profilePS5129427.57967121IPR017930Myb domain
SMARTSM007172.3E-1671119IPR001005SANT/Myb domain
PfamPF002492.9E-1672115IPR001005SANT/Myb domain
CDDcd001671.75E-1374117No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2274119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASSSTTNTS DGAKSSSCPR GHWRPGEDEK LRQLVEKYGP QNWNSIAEKL EGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARL FPGRTDNAVK NHWHVVMARR  120
SRERSRLLAR ATASSSSSPS SAYHSFGTGL PATSSLCFGF SKLGGGGLFS SPAAAPPTSL  180
FKRFGTATGS KGLLGPSYEA ARYSYSGNKQ PAPPVSITFS SPREALAMDI GHHHGRHEHR  240
QKDYHASDGE EPLKRKDVPF IDFLGVGVSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-32201204104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-32201204104C-Myb DNA-Binding Domain
1msf_C2e-32201204104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656751e-145BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds.
GenBankHQ8586821e-145HQ858682.1 Zea mays clone UT1138 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827950.10.0myb-related protein A-like
TrEMBLA0A2S3IEK70.0A0A2S3IEK7_9POAL; Uncharacterized protein
STRINGPavir.Hb01200.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-61myb domain protein 52