PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 28937.1 Da PI: 4.9309 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 94 | 143 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + +g +r++lg+f+t+e Aa a+++a+ + +g Pahal.H02092.1 94 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 143 67******.**********43343..**********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-30 | 93 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.509 | 93 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 94 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.73E-15 | 94 | 152 | No hit | No description |
Pfam | PF00847 | 2.5E-12 | 94 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 94 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 94 | 153 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-8 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEQGNHTFSA SDIYDSAAAP AAPLPFGADD MLLELDAFLL DTNAAEESSE WLSPSPSSSS 60 DAAVEPLSPS TPGQQRRPDA GASPPGEKRQ ATAFIGVRKR PWGKFAAEIR DSTRRGARVW 120 LGTFDTPEAA ALAYDQAAFS ARGDGAVLNF PVERVRESLG ALALAGAGAG DGGSPVLALK 180 RRHSKRTRRR KQQLSPATDD GMNNLKPRRQ PERQCGADAS AVPVPELEQQ AGARCWCHCG 240 GGVVELEDLG TDYLDELLRV SSELECSLIG GGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 94 | 153 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 191 | TRRRKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727683 | 2e-77 | KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828259.1 | 0.0 | ethylene-responsive transcription factor ERF091-like | ||||
TrEMBL | A0A2S3IDY2 | 0.0 | A0A2S3IDY2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01074.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-30 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02092.1 |