PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01533.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 310aa MW: 33709.7 Da PI: 6.6076

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01533.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	129	176	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ f L +++P + +K +K++iL +++Y+k+L+ Pahal.H01533.2 129 QEHVAAERKRREKMQRQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 176 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.894	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-10	129	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	130	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-15	130	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-11	131	180	No hit	No description
SMART	SM00353	1.3E-12	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDELNQWNSE SSHPEPDDQD ELAYMYQQQE GHAGMQQLFQ DPHPRHHTLA MSGFQRFGSA 60 SALPNLSFRG AVAAVKNEQG QPSSSSILSF GGLPPVARTL TFSGGEDWPN VAVEGVPPER 120 RSRSHLSTQE HVAAERKRRE KMQRQFVALA TMVPDLTKTD KISILGSTIQ YVKQLEEKVK 180 TLEKQSARRT AASEYTGSED KGHVSSADTQ QASGPSGSTT RGVGSSIPTV EASIHDDTVL 240 LKICCQRRSG VLVMIISELE SLGLSIINTS VFPFSNPYFS INITAKIGEG FSTTVELVKN 300 LTTALRGFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	ERKRRE
2	135	140	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828601.1	0.0	transcription factor bHLH18-like
TrEMBL	A0A2S3ID80	0.0	A0A2S3ID80_9POAL; Uncharacterized protein
STRING	Pavir.Hb01590.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H01533.2