PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01533.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 325aa MW: 35476.8 Da PI: 7.325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01533.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	144	191	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ f L +++P + +K +K++iL +++Y+k+L+ Pahal.H01533.1 144 QEHVAAERKRREKMQRQFVALATMVPDL-----TKTDKISILGSTIQYVKQLE 191 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.894	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	144	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	145	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-15	145	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.26E-11	146	195	No hit	No description
SMART	SM00353	1.3E-12	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MKEGNPRKNL KDQKVMDELN QWNSESSHPE PDDQDELAYM YQQQEGHAGM QQLFQDPHPR 60 HHTLAMSGFQ RFGSASALPN LSFRGAVAAV KNEQGQPSSS SILSFGGLPP VARTLTFSGG 120 EDWPNVAVEG VPPERRSRSH LSTQEHVAAE RKRREKMQRQ FVALATMVPD LTKTDKISIL 180 GSTIQYVKQL EEKVKTLEKQ SARRTAASEY TGSEDKGHVS SADTQQASGP SGSTTRGVGS 240 SIPTVEASIH DDTVLLKICC QRRSGVLVMI ISELESLGLS IINTSVFPFS NPYFSINITA 300 KIGEGFSTTV ELVKNLTTAL RGFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	ERKRRE
2	150	155	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828601.1	0.0	transcription factor bHLH18-like
TrEMBL	A0A2S3ID80	0.0	A0A2S3ID80_9POAL; Uncharacterized protein
STRING	Pavir.Hb01590.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H01533.1