PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01521.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 383aa    MW: 39336.3 Da    PI: 7.9369
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01521.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.7e-3286141359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +vrY+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e ++
  Pahal.H01521.1  86 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEADD 141
                     79**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2987139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3088138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2388139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73589138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.1E-31248320IPR009057Homeodomain-like
SuperFamilySSF466891.03E-20249318IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-27260316IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDLSGTQGEL AIPRHANVVV SPYGAGVGGG SAGGHVLQLH HGNNNGQSPA LPPSPPAAPA  60
EEMESSGKKR GLAAGAGIGG GGGSAAVRYR ECLKNHAAAI GGNATDGCGE FMPSGEEGSL  120
EALKCSACGC HRNFHRKEAD DDDDVDMYAV GDGFGRGHGP RAAHRLLAPA LPHHSKGGSG  180
GGLLVSAADP YGAYAAARAL PPALPPPGHG HGHVHHLPHH QYVMPLNMMH TGSESDDMDG  240
GAAGGGDAER GGSGGSSSSK KRFRTKFTPE QKARMLEFAE RVGWRLQKLD DGMVQAFCQE  300
IGVKRRVLKV WMHNNKHNLA TKRLETSPQE QPAVAAAMAS PPAPPQMPLQ MMPAGMMPPP  360
PQAAGPSCLR GGPGSPPPPK LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242593181675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826854.10.0zinc-finger homeodomain protein 4-like
RefseqXP_025826855.10.0zinc-finger homeodomain protein 4-like
RefseqXP_025826856.10.0zinc-finger homeodomain protein 4-like
SwissprotQ53N872e-92ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A2S3ID860.0A0A2S3ID86_9POAL; Uncharacterized protein
STRINGGRMZM2G068330_P021e-142(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-27homeobox protein 31