PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H01416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 153aa MW: 16668.1 Da PI: 9.3544 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.9 | 7.8e-15 | 71 | 106 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C+nCg ++ Tp++Rrgp+g +t CnaCGl+++k++ Pahal.H01416.1 71 CANCGESSeaTPMMRRGPSGYRTFCNACGLMWAKNN 106 *********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 3.5E-7 | 38 | 70 | IPR010402 | CCT domain |
SMART | SM00401 | 4.0E-7 | 65 | 118 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.302 | 65 | 112 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-9 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-15 | 70 | 111 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.92E-10 | 70 | 113 | No hit | No description |
Pfam | PF00320 | 2.6E-12 | 71 | 106 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 71 | 98 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
VETILMLLNG YELAPAQSAR PQLTHLVQPI VVPRDFDRTA AVSRYREKRK STLKFDVKAD 60 YSIRREIASS CANCGESSEA TPMMRRGPSG YRTFCNACGL MWAKNNKIRK LTSAACCGGG 120 AVRLHAYLLH TDTSVQPGSR LTGSSSEECH TA* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828797.1 | 1e-111 | GATA transcription factor 20-like | ||||
TrEMBL | A0A3L6Q3U9 | 1e-65 | A0A3L6Q3U9_PANMI; GATA transcription factor 28-like | ||||
TrEMBL | K3ZLQ7 | 1e-66 | K3ZLQ7_SETIT; Uncharacterized protein | ||||
STRING | Si027518m | 2e-67 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 4e-20 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H01416.1 |