PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01335.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 338aa MW: 37663.7 Da PI: 8.2553

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01335.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	130	193	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv+a + ++ W Ia+t++ +Rt+kq+k++w++y Pahal.H01335.1 130 RLDWTIAEEEKLVHAWVYHSNDsitgnnqtglsFWGQIAETFNstvepsRRRTAKQLKDHWNMY 193 789***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.562	125	194	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-5	126	194	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.91E-5	127	194	IPR009057	Homeodomain-like
Pfam	PF14303	1.5E-6	237	316	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MTGWSLDFHT FTDLLQSDGS QASPQDESSP MHRCSDVNSS PQPRALFPLM HLRLRGHLHR 60 HIIIRTRSGT EGPYPPPSYA PPPYAPPPYA PPPYGPYPPP LHAAPTVPSP VSVESQNKGA 120 GATEPKRPKR LDWTIAEEEK LVHAWVYHSN DSITGNNQTG LSFWGQIAET FNSTVEPSRR 180 RTAKQLKDHW NMYNRDVTLF NGYYIQEERV RQSGTNDAMV MEGAMAYEND PKVTTAFKRH 240 HWWRAVRHEP KWAAKHGPGS ESDVSSKRTC LGVSGEYSSG GTEDTEEDNE TRPIGRDRAK 300 AAKRKEKAKG KEKGKESQSS SVVASSNEEH VGWLSEG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662552.1	2e-96	ribonuclease 3
TrEMBL	A0A2T7EH45	1e-165	A0A2T7EH45_9POAL; Uncharacterized protein
STRING	GRMZM2G169418_P01	6e-96	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.H01335.1