PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01281.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 339aa    MW: 36065.8 Da    PI: 5.5343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01281.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.5e-111149342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    ien  +   t+ +Rr g+ KK + L +LC++e+++i f +
  Pahal.H01281.1 11 IENPKR-RATYKNRRDGLVKKTSQLATLCGVEALLICFDP 49
                    677655.579**************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-10161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.358147IPR002100Transcription factor, MADS-box
CDDcd002661.01E-17381No hitNo description
PfamPF003191.9E-121258IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPRGKLGMKL IENPKRRATY KNRRDGLVKK TSQLATLCGV EALLICFDPK PAGSGHSFTA  60
AAYYQEELAK QQRKLRKIEQ CGPDKLNLQD WRLADLSPGD LGALLVTLDE TLRKAQQRIV  120
ALGGHVEDDG DVPSATTAMV AAPTPLADYN SFDLAFSVPD AGSMVTLYYY PPFDMLPQPE  180
PLQPPCLAYH QMLLPGYTFQ MLPPPPLIAP PDLGMAGTGT VDFPPFATNF SHGGATGPGF  240
YDDFMPGFDA TGGGVVYVDD YVAGGGQSFA AGHAGASYQH EHHLPAGVWP VSRLNNNPGP  300
MDAAALPERN DFAVLPGSST SSSSTSTCFQ GGCHCGFN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HK590.0A0A2S3HK59_9POAL; Uncharacterized protein
STRINGSi039273m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-10MIKC_MADS family protein