PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01257.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 617aa    MW: 65222.9 Da    PI: 6.472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01257.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.61.4e-1182215902374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                     v +L++cA+ ++++++ +a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++    ++ ++al++++ ++Pi++f 
  Pahal.H01257.1 221 VVALTACADSLAARNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALALRVVRTWPHLFDVTPPRELTDGAvGDDDATALRILNAITPIPRFL 315
                     5689****************************************************************9988878999***************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rL ++A++lg+ fef++ v++rled+
  Pahal.H01257.1 316 HFTLNERMLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRAIPPAHVRITGVGE----SRQELQETGARLGRVAAALGLAFEFHA-VVDRLEDV 405
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                     +l++L+vk+gE++aVn+vl  hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+a fd++ +a+l+ +s +r+
  Pahal.H01257.1 406 RLWMLHVKRGECVAVNCVLTAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVdAAGLSDASPARV 498
                     *************************87777666..89*********************************************9999********* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                     k E++ ++rei+n+va e a+r+erhe+++ W++r+ee GF+++ +++++a+qa+++ r+++   y+v+ +   + l+l W d+p+++vSaW+
  Pahal.H01257.1 499 KAEEM-FAREIRNAVAFEDADRFERHESFAGWQRRMEEGGFQNAGIGDREATQARMIARMFAPGNYSVQAQgdGEGLTLRWLDQPMYTVSAWT 590
                     *****.********************************************************555*999554367788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.769194568IPR005202Transcription factor GRAS
PfamPF035145.0E-116221590IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR SNRSDGGGAP RVAAGDARNG GGGATCSFRA  60
HPAPPVTQAV SWGAKPEPGG NGAGGVWERS SRAVKRAHEE GAGEEYGGPV VRAKRTKMGG  120
DGDEVWFHQP IAGTVQAAGG GEGEEPEEEK VFLVPSAAAF PHAGPSLAAA KKEEFSKSPS  180
NSPASSGGTD GGSSAVPPPE QHARNGVPAP GAAGREAMEL VVALTACADS LAARNHDAAN  240
YYLARLGEMA SPAGPTPMHR VAAYFAEALA LRVVRTWPHL FDVTPPRELT DGAVGDDDAT  300
ALRILNAITP IPRFLHFTLN ERMLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLATRAIPP  360
AHVRITGVGE SRQELQETGA RLGRVAAALG LAFEFHAVVD RLEDVRLWML HVKRGECVAV  420
NCVLTAHRLL RDDTGAALAD FLGLARSTGA AILLLGEHED ALNSGRWEAR FARALRYYAA  480
AFDAVDAAGL SDASPARVKA EEMFAREIRN AVAFEDADRF ERHESFAGWQ RRMEEGGFQN  540
AGIGDREATQ ARMIARMFAP GNYSVQAQGD GEGLTLRWLD QPMYTVSAWT PVGDGGGGGS  600
TVSASVSTTA SHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6122759126380Protein SCARECROW
5b3h_A2e-6122759125379Protein SCARECROW
5b3h_D2e-6122759125379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A2S3HMA30.0A0A2S3HMA3_9POAL; Uncharacterized protein
STRINGSi008220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-121GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]