PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01205.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 438aa MW: 45926.2 Da PI: 5.1286

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01205.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.7e-11	248	292	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++Lr+llP++ K +K ++L A ++k L Pahal.H01205.1 248 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLVNAASFLKTL 292 7899*********************9.....6899999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-16	241	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.608	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-15	248	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-9	248	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-11	248	297	No hit	No description
SMART	SM00353	9.9E-12	249	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MDEVWCGLDL QQLQAGDPLA GLHDHDPFWP ALADCTASFL AADTACFGVA DIDLSGGSAS 60 GKAAAVDGMD TSGFFAEDGR HHHLMHQEQQ PVYSSSSLSS KRSLSVDSGG SSSTFFQLDD 120 ASLAAATAAG LFSSPSHSHP AAAAAPQDPF AAGEDEALMR AMMAVISSAS PSSSESSSPL 180 LSQDYTTAAQ PAVVQPRNAS HVTVRSSSLA VGPERTTSLT SAAAGGRQQE EDAKAAAAGS 240 NSSSQVYHMM SERKRREKLN DSFHTLRSLL PPCSKKDKTT VLVNAASFLK TLEAQVSELE 300 EKNTKLERYV PREGAGASAA AAAHRRAKVS ISRAGPDERQ VSLMVMVMVE CDIVDLVLHV 360 LEYLRWMSGV SVLSVDADTY SPQALLKARA NIKLQIMDGD CWDEALFHEA MTKAVHEATS 420 SPSSSSCAAP APLVAAA*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MDEVWCGLDL QQLQAGDPLA GLHDHDPFWP ALADCTASFL AADTACFGVA DIDLSGGSAS  60
GKAAAVDGMD TSGFFAEDGR HHHLMHQEQQ PVYSSSSLSS KRSLSVDSGG SSSTFFQLDD  120
ASLAAATAAG LFSSPSHSHP AAAAAPQDPF AAGEDEALMR AMMAVISSAS PSSSESSSPL  180
LSQDYTTAAQ PAVVQPRNAS HVTVRSSSLA VGPERTTSLT SAAAGGRQQE EDAKAAAAGS  240
NSSSQVYHMM SERKRREKLN DSFHTLRSLL PPCSKKDKTT VLVNAASFLK TLEAQVSELE  300
EKNTKLERYV PREGAGASAA AAAHRRAKVS ISRAGPDERQ VSLMVMVMVE CDIVDLVLHV  360
LEYLRWMSGV SVLSVDADTY SPQALLKARA NIKLQIMDGD CWDEALFHEA MTKAVHEATS  420
SPSSSSCAAP APLVAAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	ERKRRE
2	252	257	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819658.1	0.0	putative transcription factor bHLH041
TrEMBL	A0A2S3HUI8	0.0	A0A2S3HUI8_9POAL; Uncharacterized protein
STRING	Pavir.Eb01823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10174	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	7e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H01205.1