PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01192.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 453aa    MW: 47694.6 Da    PI: 8.6534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01192.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-065274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cgk F r  nL+ H r H
  Pahal.H01192.1 52 FVCEICGKGFQRDQNLQLHRRGH 74
                    89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-65174No hitNo description
SMARTSM003550.0125274IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-55274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6145274IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035513095125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.24E-6125150No hitNo description
SMARTSM00355160130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSSSNLTSSA SGGPNAPPAA GNKRKRSLPG NPDPDAEVVA LSPATLMATN RFVCEICGKG  60
FQRDQNLQLH RRGHNLPWKL KQRGTGKEAQ RKKVYVCPEA SCVHHDPARA LGDLTGIKKH  120
FFRKHGEKKW KCDKCSKKYA VHSDWKAHSK ICGTREYKCD CGTIFSRRDS FITHRAFCDA  180
LTEESAKAIG LGAMAAAAPA HHHPLLYSPP PPVMQHQVQD LAALQENHHH HQEVMQPPPA  240
QQQHHCNYAM KTEMPPWPSM AYDHHAHPLL QPLCNAAAAA AQSSATSAPP PPPPPAASAH  300
LSATALLQKA AQMGATIGGA GAGAHYTQMA GPAASAPGSA TFGLGLPGLS AQQQPVDGVM  360
GSLARTASHG RSGEDGGGGG GGGDGMTRDF LGLRAFSHGD ILGLAGFDSS CLGAVAANAN  420
MTCYEPQQQA QAQAQQQQQS SNEPWHGMGS HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33126191368Zinc finger protein JACKDAW
5b3h_F1e-33126191368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814390.10.0protein indeterminate-domain 7-like
RefseqXP_025814391.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-113IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2S3HUJ10.0A0A2S3HUJ1_9POAL; Uncharacterized protein
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]