PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01174.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 416aa    MW: 42598.7 Da    PI: 5.7547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01174.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07339379954
                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Pahal.H01174.1 339 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 379
                     69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-11335388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13336389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-11336384No hitNo description
PfamPF000105.8E-5339379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDHSFSDMIL SESAWSGGGG VGGDGGAVLL PPEVVGVGGV GVDGGNMTVL ERLVLDEALA  60
AAIVELQGIQ APAACAVKVP AAGGGVVGEA VAFPPMATPT PAYADVDADV LQRQQHRHRH  120
QGAMGMAPDY DLTPATAAVA VTTVPAAFTC AAAAVDSAAG LVVDAPVFSG NETDAPGAAT  180
TATAAAMTAT TSQQQCEEGK GGGRRQRRPN RKRKAAEPSS VPAQESTLCS LLASTTAGEG  240
GIQIAFNTSA QAPAGAKRAK PSLSGSGSSS ISFDGRNAGA NGGVDDPMYE PDTEALAQVK  300
EMIYRAAAMR PVSLGSDDAG ERPRRRNVRI SSDPQTVAAR QRRERISERL RVLQKLVPGG  360
AKMDTASMLD EAANYLRFLK SQVRELQTLD RRNFAANATN VNDAIAAPPP PWPGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-143AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-143AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-143AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-143CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A2S3HUK40.0A0A2S3HUK4_9POAL; Uncharacterized protein
STRINGPavir.Eb02113.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-35bHLH family protein