PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01018.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 466aa    MW: 51672.7 Da    PI: 10.2399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01018.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-1898186197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++ p+ +++  rl +p +f ++ ++++++   ++l+ +sg++W+  l  +  s++  +++GWkeFv ++ +k+g f+vF++dg s+f   v+
  Pahal.H01018.2  98 FFKIFFPNQSGE--RLKIPASFHRHLKEQPTG--LVSLKGPSGNTWQAVL--TSDSEGLCFGQGWKEFVTDHSVKQGHFLVFTYDGLSKF--SVT 184
                     788887766665..69******9877888777..7***************..********************************998998..666 PP

                     EE CS
              B3  96 vf 97 
                     vf
  Pahal.H01018.2 185 VF 186
                     66 PP
2B345.41.5e-14359450398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++ s+v     + +  +f++e    +++sk++tl d+ g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l ++   + +v+++
  Pahal.H01018.2 359 QTMMESYVYVGFFMNITCEFVRESL--PRTSKKMTLWDPLGKPWEVNYVYYSDRSVASFSGGWGKFALGNNLEKFDVCVFELFKE--DNIKVHIY 449
                     678999999999999999**98884..46889****************9988888899***********************8764..44578877 PP

                     - CS
              B3  98 r 98 
                     r
  Pahal.H01018.2 450 R 450
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2291187IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.85896189IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-1997187IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-1698185IPR003340B3 DNA binding domain
CDDcd100171.11E-1798186No hitNo description
SMARTSM010193.9E-1698189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-23348450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-23350450IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-22355450No hitNo description
PROSITE profilePS5086312.351357452IPR003340B3 DNA binding domain
SMARTSM010196.1E-10357452IPR003340B3 DNA binding domain
PfamPF023625.2E-13359450IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVAGRKKQQG SRGAAATPEK ESGKGKEKAA REDGKERAKE KEVTGASKKA AKGKEPAKEK  60
QKQKGKQKEA REDGKETAKA KQQQQEEAAA AKSAGQQFFK IFFPNQSGER LKIPASFHRH  120
LKEQPTGLVS LKGPSGNTWQ AVLTSDSEGL CFGQGWKEFV TDHSVKQGHF LVFTYDGLSK  180
FSVTVFGSLG VVDPPALVAK PTNDVVIKIE DDEEVQGDMD AGGTSDTSIL PPEEGNGITR  240
KRTRGVNDLL EGGNASKRHS SVAKNAEKKR PEAIPRTSKD ASTVNNTEKG TPFSLLDESM  300
AFNKTQIREK NMPKLGKFIV RRARQPVVIS QRRPVTQEEK DLALRRAKEF KSKNPFAVQT  360
MMESYVYVGF FMNITCEFVR ESLPRTSKKM TLWDPLGKPW EVNYVYYSDR SVASFSGGWG  420
KFALGNNLEK FDVCVFELFK EDNIKVHIYR VVPEITPLLR ASSKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1233045122142B3 domain-containing transcription factor VRN1
4i1k_B3e-1233045122142B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.10.0B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.10.0B3 domain-containing protein Os11g0197600-like
SwissprotQ2R9D21e-135Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A2S3ID180.0A0A2S3ID18_9POAL; Uncharacterized protein
STRINGPavir.Ha01581.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]