PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00891.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 397aa    MW: 41226.5 Da    PI: 9.1202
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00891.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.74.8e-431072492124
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s as++ss+++a++a 
  Pahal.H00891.1 107 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFTsLAVSLRSGASHPSSASRAAAAF 201
                     899******************************************************************99999999999999999995555555 PP

             TCP  96 .kskksqksaasalnlakesr..................akararare 124
                      +  +++++ a++l  ++ ++                  a + +r+r+
  Pahal.H00891.1 202 hHLPPPHHEVAAMLGWNHGHHhhqqflpppqqqapqdpgAGEFMRKRY 249
                     588999999999999988444356666666655555555555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349113167IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-36113223IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDAPSSSTST STNSSRSASE QQHQHQQQRQ HRQHHAAGQP HHPFYYAAAP APGAAAANAA  60
GMPQFMGSLV IVQAPSAGAG AGEVQLAQAA PAPGPSGGAE KKPVVPAPAK RPTKDRHTKV  120
EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA EPAIVAATGT GTIPANFTSL  180
AVSLRSGASH PSSASRAAAA FHHLPPPHHE VAAMLGWNHG HHHHQQFLPP PQQQAPQDPG  240
AGEFMRKRYR DGADDLFKDA AARQNPDDGG GGEAEEHKAR VAPPAGAMWA VAPPNSSAAG  300
AFWMQPAWAF GAGAGGSTVQ APLQFMSTRS NNNNNFPAGA TMDANIGMLA ALNASGGVQH  360
QQQQEQEEQP PEMAQRHRTG AGANGGDAGR GAASPQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634320.0BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBankKJ7268970.0KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827969.10.0transcription factor PCF3-like
SwissprotQ53PH21e-89PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A2S3ICT60.0A0A2S3ICT6_9POAL; Uncharacterized protein
STRINGPavir.Ha00851.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-41TCP family protein