PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 397aa MW: 41226.5 Da PI: 9.1202 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 138.7 | 4.8e-43 | 107 | 249 | 2 | 124 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s as++ss+++a++a Pahal.H00891.1 107 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFTsLAVSLRSGASHPSSASRAAAAF 201 899******************************************************************99999999999999999995555555 PP TCP 96 .kskksqksaasalnlakesr..................akararare 124 + +++++ a++l ++ ++ a + +r+r+ Pahal.H00891.1 202 hHLPPPHHEVAAMLGWNHGHHhhqqflpppqqqapqdpgAGEFMRKRY 249 588999999999999988444356666666655555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.349 | 113 | 167 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-36 | 113 | 223 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDAPSSSTST STNSSRSASE QQHQHQQQRQ HRQHHAAGQP HHPFYYAAAP APGAAAANAA 60 GMPQFMGSLV IVQAPSAGAG AGEVQLAQAA PAPGPSGGAE KKPVVPAPAK RPTKDRHTKV 120 EGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIEWLLQQA EPAIVAATGT GTIPANFTSL 180 AVSLRSGASH PSSASRAAAA FHHLPPPHHE VAAMLGWNHG HHHHQQFLPP PQQQAPQDPG 240 AGEFMRKRYR DGADDLFKDA AARQNPDDGG GGEAEEHKAR VAPPAGAMWA VAPPNSSAAG 300 AFWMQPAWAF GAGAGGSTVQ APLQFMSTRS NNNNNFPAGA TMDANIGMLA ALNASGGVQH 360 QQQQEQEEQP PEMAQRHRTG AGANGGDAGR GAASPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063432 | 0.0 | BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds. | |||
GenBank | KJ726897 | 0.0 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827969.1 | 0.0 | transcription factor PCF3-like | ||||
Swissprot | Q53PH2 | 1e-89 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | A0A2S3ICT6 | 0.0 | A0A2S3ICT6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00851.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 1e-41 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00891.1 |