PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00831.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 30548.5 Da PI: 9.2443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 104 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a++ ++g Pahal.H00831.1 104 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALGFRG 153 7********.**********7.....337**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.291 | 104 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 104 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 104 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-33 | 104 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 104 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.5E-12 | 105 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-13 | 112 | 163 | No hit | No description |
PRINTS | PR00367 | 6.5E-12 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MRSGYERSRE ASMMVEALAR VVAGGAPAGA RREGASPTPA GAWQGYGYGY GEMSPPSHAA 60 PPHEYGAAAT PAQHSPAATA SAGPSGEIPS PSSAESGGGG QRRRYRGVRQ RPWGKWAAEI 120 RDPHKAARVW LGTFDTAEAA ARAYDEAALG FRGSRAKLNF PESATLRTPS APQAAAAPPP 180 PPPPQRPEAL LESQALAGGG GGGEYSEYAR FLQGAGEPPR FLEQTVTAPA AAPGSPSFPV 240 FLSFGGASES NGAARHQWWP QGSRSGSDGG AGHPPPPATW ADAGSGWWPA PPRDPSAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 103 | 161 | 4 | 63 | ATERF1 |
3gcc_A | 8e-22 | 103 | 161 | 4 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 6e-69 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 6e-69 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-69 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827506.1 | 0.0 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2S3ICP5 | 0.0 | A0A2S3ICP5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01720.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16999 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 2e-15 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00831.1 |