PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00721.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 419aa    MW: 44656.6 Da    PI: 7.3273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00721.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12228272554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Pahal.H00721.2 228 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 272
                     8899********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-16225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16227290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10228272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-5238272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGCERGEIEV GLSDTSAAAA VAGHVQQSLM EELMQLAPAV PSSSSSSLPS ISIGSPEYST  60
LIRSMADAAE PSSQERYPHP LPLHPAAVQL PGLLPPVYGQ PPFLGSEAED AAIAEAMLAI  120
ISSAPLPPPA SPNVPPGPSP PWLVRHRWSQ RRRAGAFRAY SAALSPRARP RPGAPGQRMV  180
KTAIALMLSV HVAMRERELA AARQQEDAAA AQPPPAPPQQ HTSSQLHHMI SERRRRERLN  240
ESFQTLRALL PPGSKKDKAT VLANTTEYMH KLIADVSNLE KKNRQLEAQL GLPLETQQAG  300
SDDDSSERVQ VDVTTGASTS AGGQAQVVSI RVMVRAECDL SEVVFAMLAG IKKTGRFAVV  360
TVDARQRSNR RAQVSITLRV AGGDDDEPDE TSLKEAVAKA VEDAVARPPS PPPPQWSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812545.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2T8JCJ30.0A0A2T8JCJ3_9POAL; Uncharacterized protein
STRINGPavir.J30600.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-19bHLH family protein