PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00721.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 541aa    MW: 57782.7 Da    PI: 7.3127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00721.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12350394554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Pahal.H00721.1 350 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 394
                     8899********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15347414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15349412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10350394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-5360394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDAIFALAAG PRARVLERAA TRIPGCLYIC LWAPVIAGQL IPSSHLRCVD AWIGDGSGGR  60
AREVFEAYRR AFCAAVSGCV PGWAYKDGRA YMELPEPDLT AAASLQVQEQ LYHEAGTKTG  120
VFMGCERGEI EVGLSDTSAA AAVAGHVQQS LMEELMQLAP AVPSSSSSSL PSISIGSPEY  180
STLIRSMADA AEPSSQERYP HPLPLHPAAV QLPGLLPPVY GQPPFLGSEA EDAAIAEAML  240
AIISSAPLPP PASPNVPPGP SPPWLVRHRW SQRRRAGAFR AYSAALSPRA RPRPGAPGQR  300
MVKTAIALML SVHVAMRERE LAAARQQEDA AAAQPPPAPP QQHTSSQLHH MISERRRRER  360
LNESFQTLRA LLPPGSKKDK ATVLANTTEY MHKLIADVSN LEKKNRQLEA QLGLPLETQQ  420
AGSDDDSSER VQVDVTTGAS TSAGGQAQVV SIRVMVRAEC DLSEVVFAML AGIKKTGRFA  480
VVTVDARQRS NRRAQVSITL RVAGGDDDEP DETSLKEAVA KAVEDAVARP PSPPPPQWSP  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353358ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812545.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A3L6PIY50.0A0A3L6PIY5_PANMI; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-18bHLH family protein