PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 99aa MW: 10550 Da PI: 6.528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.8e-05 | 30 | 59 | 21 | 54 |
HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++Lr llP+ a s a++L ++v YI+ L Pahal.H00624.1 30 SRLRALLPPgA-----STSSTAQVLDETVAYIRRL 59 79******955.....678**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-6 | 26 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-5 | 29 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MSSRRRSRRS PPAAAAEEQA ATTVADELVS RLRALLPPGA STSSTAQVLD ETVAYIRRLH 60 AEVDGLAERL ARLMPEDHQP YGGAADDAAQ LIIRALLM* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791209.1 | 3e-62 | transcription factor ILI7-like | ||||
TrEMBL | A0A2S3IF59 | 8e-61 | A0A2S3IF59_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CQ46 | 8e-61 | A0A2T7CQ46_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37412 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 4e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00624.1 |