PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00618.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 268aa MW: 29178.5 Da PI: 5.8628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00618.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00025	37	66	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +++ + erE+ Rd++N+ f eL ++l + Pahal.H00618.1 37 KKTHKAEREKLKRDQLNELFLELGSMLDLD 66 678899******************999764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-6	34	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-9	34	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.563	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0069	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MVADTESSDS LPGSSNAAVE TPIHGSLDQR SQEKAPKKTH KAEREKLKRD QLNELFLELG 60 SMLDLDRQNT GKATVVGDAA RVLRDLVTQV ESLGKEQSAL LSERQYVSSE KNELQEENAT 120 LKSQISELAK ELCARMGNSS IGMSHPVANA RSPDLATHLM PHQMWSSIPN ISSVAMAHQT 180 NTVSPLHTQL HSTNDVQVYA SQPQELQLFP GALSSPEREC SYLRRAGITS SSLTDSLPGQ 240 LCLSLTQSSQ EESSSDVLNS RKERRNG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	0.0	transcription factor BHLH062-like isoform X1
TrEMBL	A0A2S3IF23	0.0	A0A2S3IF23_9POAL; Uncharacterized protein
STRING	Pavir.Ha00418.1.p	1e-158	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00618.1