PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00589.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 727aa MW: 79813.8 Da PI: 4.6562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00589.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.4e-05	388	411	2	23
EETTTT.EEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCg.ksFsrksnLkrHirt.H 23 Cp+C+ k F ++ +L +H+ + H Pahal.H00589.1 388 ICPICDrKKFVDSGLLLSHMCRkH 411 7********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	3.4E-14	25	151	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	1.52E-10	26	158	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	3.4E-14	215	296	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	1.52E-10	243	290	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	3.0E-13	334	431	IPR006865	Domain of unknown function DUF629

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MAYAGAAAEA EAVRAEAKEI MLADHDGDME ASLARARALV HAHPGSVVAY RLLGELHYAA 60 AMRAARGEGS PEDRKAAAAP HLRVALEALT AARRLAPDCV DVAATLGDAL AASRMYAEAE 120 AEFRRAQSIP NPSDPALHNA AYGMYEGYEH ERDPAFVAER VEEARERARA SYARMTIEEL 180 VPSAVQRVLD AGKLLGAAEG RKRGKLVAES FPNLARAQYL QAYMDLEFVR SLDPAIDKRP 240 FLRRTLAIAE RLARAFPKSP VIACFRAKLL FVLGEYDAAE RECRRALDMK EPDDPQLDCI 300 PAGSISGENL GARLVSLACE FHELINKIVM MAADYWDSMS GERRHDSFLR VSSDVLQDEY 360 RKVDPSCAFT MSDVRSFVKE HKSWKFWICP ICDRKKFVDS GLLLSHMCRK HPRAVLPRLQ 420 SLLDQSLNSE ASEEEDFLDG VTFCEDSAEQ DMICLNKSSV VFKWLFYAPS SGVGAKPLPE 480 VRAKKREKGS MLLEGIKEKM KTLPTDKSST EFAEAFPRIQ ELWLKFLKAS MLDYRGVILE 540 LARSFLWGEL KKCMTQDPQL ADKWISATDI DAVFITEAEP SHAEGDPETG DDKQPSQADG 600 ALMVSEDHKE SNVCIQHGES SETPADNTES TDLATSVAES GKDLDATLDK VDIDPKISEN 660 NQESEVQVEG ESSEATVTNM SDPATSMLES GNDLDVKLEN LQIDPSSDSS IATSGAGSSG 720 QTGQQD*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MAYAGAAAEA EAVRAEAKEI MLADHDGDME ASLARARALV HAHPGSVVAY RLLGELHYAA  60
AMRAARGEGS PEDRKAAAAP HLRVALEALT AARRLAPDCV DVAATLGDAL AASRMYAEAE  120
AEFRRAQSIP NPSDPALHNA AYGMYEGYEH ERDPAFVAER VEEARERARA SYARMTIEEL  180
VPSAVQRVLD AGKLLGAAEG RKRGKLVAES FPNLARAQYL QAYMDLEFVR SLDPAIDKRP  240
FLRRTLAIAE RLARAFPKSP VIACFRAKLL FVLGEYDAAE RECRRALDMK EPDDPQLDCI  300
PAGSISGENL GARLVSLACE FHELINKIVM MAADYWDSMS GERRHDSFLR VSSDVLQDEY  360
RKVDPSCAFT MSDVRSFVKE HKSWKFWICP ICDRKKFVDS GLLLSHMCRK HPRAVLPRLQ  420
SLLDQSLNSE ASEEEDFLDG VTFCEDSAEQ DMICLNKSSV VFKWLFYAPS SGVGAKPLPE  480
VRAKKREKGS MLLEGIKEKM KTLPTDKSST EFAEAFPRIQ ELWLKFLKAS MLDYRGVILE  540
LARSFLWGEL KKCMTQDPQL ADKWISATDI DAVFITEAEP SHAEGDPETG DDKQPSQADG  600
ALMVSEDHKE SNVCIQHGES SETPADNTES TDLATSVAES GKDLDATLDK VDIDPKISEN  660
NQESEVQVEG ESSEATVTNM SDPATSMLES GNDLDVKLEN LQIDPSSDSS IATSGAGSSG  720
QTGQQD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	488	AKKREKG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791203.1	0.0	uncharacterized protein LOC112872314
TrEMBL	A0A2S3IF76	0.0	A0A2S3IF76_9POAL; Uncharacterized protein
STRING	Pavir.J27150.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1389	4	4

Link Out ? help Back to Top
Phytozome	Pahal.H00589.1