PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 27887.9 Da PI: 5.096 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.7 | 3.1e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + Pahal.H00511.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 86 579************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.7E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.1E-20 | 4 | 107 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER GLPRRRKSNG SDPENDESRS 120 SKMAIRSANI SPRGRGRGRG RGRGRPPTKR KEVGYVQFED ESSMFAEQGE PLPGDETVPE 180 SNHSNENITQ SAQPPVEAPP PAAAPGASKV EEANTDHQSD WPMPDATIAN IGVGPSGFGH 240 LTVQVDEDED YDNED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-23 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | PRRRK |
2 | 134 | 143 | RGRGRGRGRG |
3 | 134 | 144 | RGRGRGRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828176.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
TrEMBL | A0A2T7CP62 | 0.0 | A0A2T7CP62_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I9I1 | 0.0 | A0A2T8I9I1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea01995.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 6e-52 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00511.1 |