PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00283.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 931aa MW: 102663 Da PI: 5.6388

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00283.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2e-06	698	758	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHHH..HHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeer..eeLAkkl.....gLterqVkvWFqNrRak 54 rrkRt +++eq++eLe++ ++ + ++++ + ++kl ++t +q k+W Nr+ak Pahal.H00283.1 698 RRKRTIMNDEQIDELEKALVDEPEMHKNAIllQNWSEKLsvqgpEITASQLKNWLNNRKAK 758 89****************99999999876689999999999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-6	677	759	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-6	694	764	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.576	695	762	IPR001356	Homeobox domain
SMART	SM00389	1.3E-4	697	766	IPR001356	Homeobox domain
CDD	cd00086	1.63E-5	698	761	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MIDMVSAIEE LSGLTTKELS EMLKESDNFV LQSKAEDGGP KQVDMEKFVS SLPLHLLAVC 60 LELGQGSDLA YVLRGVRFLH SLSELASRHT RLEQVLLDDV RLSEQVMDLI FFLLSILAQR 120 KKENNVGASP LVHASLVAAS LHLLTSYFSS QWHELVHILL AHPKVDIFMD VAFDSLHEDV 180 RLLSFRLSSM SFGSIPIGSL ECRLAHFICQ QCEASLQFLL LLCQQKLFRD RILKNKELSR 240 NGGILSLSHT ILKLVVPYCL KGSTDIVASI SRLKAKILSI LLQLCEAESV SYLDEVATSP 300 NSMRLGQTLA LEVLNLLKTA FGRKQQNTSD SHDKSYPMGS VLISALRLVD VFSDDSNFRS 360 SFMTNTVPFL TQILAIPHDE FVLSWCSVNL PVIEEDANLD YDPFGAAEVA LLASDNALTE 420 ARASYSCPFR PSLPSMAYAQ TRTSCVVKII ANLHVFVPNI CEEQERDLFL HNFQKYLVSG 480 SPRLSADQPA SNDFKAAKVC KNLGSLSDYA KTLIPNLLNE EDVQLLSEFS DKLQSWCKSQ 540 AGQAALQVVH TDSPSESKEG MKLVQQSLPT QASTLDPNMN NLPKDVQNME VSIPVSSIKP 600 EGNAKDETPK NCVARNGSFL QNAVGQDLVH LGVARTASAG FSTVSSGVST GHQRSKMDLD 660 PASSSVDHFK TPELSKENGL QEDEKGESSM YDERQPKRRK RTIMNDEQID ELEKALVDEP 720 EMHKNAILLQ NWSEKLSVQG PEITASQLKN WLNNRKAKLA RIAKERGVPF EGESADKPST 780 PATPHPGESS ESAGEDSYMP PARVMNAISK GRLVSPDGNE QTSQAEFSQN MMLSRPFTRS 840 FSLEPGRLVS LVDGDGNEVG RGKIVHAPPV KSAAETRLCV VDVTELRIEK WRELPHPSEA 900 SGRTFQEAEV RNGGVIRVPW DVVRIAPVTQ *

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MIDMVSAIEE LSGLTTKELS EMLKESDNFV LQSKAEDGGP KQVDMEKFVS SLPLHLLAVC  60
LELGQGSDLA YVLRGVRFLH SLSELASRHT RLEQVLLDDV RLSEQVMDLI FFLLSILAQR  120
KKENNVGASP LVHASLVAAS LHLLTSYFSS QWHELVHILL AHPKVDIFMD VAFDSLHEDV  180
RLLSFRLSSM SFGSIPIGSL ECRLAHFICQ QCEASLQFLL LLCQQKLFRD RILKNKELSR  240
NGGILSLSHT ILKLVVPYCL KGSTDIVASI SRLKAKILSI LLQLCEAESV SYLDEVATSP  300
NSMRLGQTLA LEVLNLLKTA FGRKQQNTSD SHDKSYPMGS VLISALRLVD VFSDDSNFRS  360
SFMTNTVPFL TQILAIPHDE FVLSWCSVNL PVIEEDANLD YDPFGAAEVA LLASDNALTE  420
ARASYSCPFR PSLPSMAYAQ TRTSCVVKII ANLHVFVPNI CEEQERDLFL HNFQKYLVSG  480
SPRLSADQPA SNDFKAAKVC KNLGSLSDYA KTLIPNLLNE EDVQLLSEFS DKLQSWCKSQ  540
AGQAALQVVH TDSPSESKEG MKLVQQSLPT QASTLDPNMN NLPKDVQNME VSIPVSSIKP  600
EGNAKDETPK NCVARNGSFL QNAVGQDLVH LGVARTASAG FSTVSSGVST GHQRSKMDLD  660
PASSSVDHFK TPELSKENGL QEDEKGESSM YDERQPKRRK RTIMNDEQID ELEKALVDEP  720
EMHKNAILLQ NWSEKLSVQG PEITASQLKN WLNNRKAKLA RIAKERGVPF EGESADKPST  780
PATPHPGESS ESAGEDSYMP PARVMNAISK GRLVSPDGNE QTSQAEFSQN MMLSRPFTRS  840
FSLEPGRLVS LVDGDGNEVG RGKIVHAPPV KSAAETRLCV VDVTELRIEK WRELPHPSEA  900
SGRTFQEAEV RNGGVIRVPW DVVRIAPVTQ *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827632.1	0.0	nodulin homeobox isoform X1
TrEMBL	A0A2S3IG65	0.0	A0A2S3IG65_9POAL; Uncharacterized protein
STRING	Pavir.Hb00221.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5126	14	18

Link Out ? help Back to Top
Phytozome	Pahal.H00283.1