PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H00144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22900 Da PI: 10.0672 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 6e-15 | 36 | 85 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g ++AeIrd + +g +r++lg+f+t+e Aa a+++a+ + +g Pahal.H00144.1 36 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 85 57***999.**********43343..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.653 | 35 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-27 | 35 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 36 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 36 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-19 | 36 | 95 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.30E-11 | 36 | 70 | No hit | No description |
PRINTS | PR00367 | 2.6E-7 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAVEGMVWCP NNTWDRQLRQ PDDDASPGEK ERPHAFIGVR PRPWGTFAAE IRDSTRRGAR 60 VWLGTFDTPE AAALAYDQAA FSARGAAAIL NFPVERVRES LGPLALTGGA GGSPVLALKR 120 RHSKRRHRQR KKLSRSVVTT TTSKDLISKQ QRQPPRHCSD VPSLSSGVVA MAVPQHHAVT 180 VRCGVLELED LGTDYLDELL RASCELTAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 36 | 95 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826606.1 | 1e-153 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2S3IFS9 | 1e-151 | A0A2S3IFS9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00307.1.p | 8e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-29 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H00144.1 |