PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00127.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 232aa    MW: 26619.5 Da    PI: 8.2181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00127.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
   Pahal.H00127.1 10 KGPWTEQEDMQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP

2Myb_DNA-binding513.3e-1664108248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
   Pahal.H00127.1  64 GRMSPHEECLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                      89*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.886561IPR017930Myb domain
SuperFamilySSF466893.74E-298104IPR009057Homeodomain-like
SMARTSM007171.1E-14959IPR001005SANT/Myb domain
PfamPF002494.7E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-181164IPR009057Homeodomain-like
CDDcd001679.21E-111257No hitNo description
PROSITE profilePS5129419.72562112IPR017930Myb domain
SMARTSM007171.4E-1562110IPR001005SANT/Myb domain
PfamPF002496.8E-1464107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2365111IPR009057Homeodomain-like
CDDcd001672.52E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDMQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG  60
LKHGRMSPHE ECLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSIS  120
PSSSSSSVTY QSCLLDTCPI IGMGAADTHN GSSCVTSTLE STQSAMDAYP IDQIWREIEE  180
PQAPAFLGIA EGKEKTCSSI HCPLPSPAMW DYKFPEIFWK MADEEIRMLA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2771121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1367800.0HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367820.0HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankKM3874100.0KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827459.11e-174myb-related protein MYBAS1-like
SwissprotQ53NK61e-128MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2S3IFT71e-173A0A2S3IFT7_9POAL; Uncharacterized protein
STRINGPavir.Hb00058.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-72myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]