PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00101.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 537aa    MW: 60793.2 Da    PI: 5.9319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00101.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS52.21.1e-16244334194
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ cA+av+++++  a++lL++++++as +gd++qRla++f+++L+arl++++s+l + l +++ s   + e l+a++l+  +  ++kf 
  Pahal.H00101.1 244 LRTLLVLCAQAVAANNHMSARELLKQIKKHASASGDATQRLAQCFAKGLEARLVGTGSHLWQLLITERPS---VMEFLQAYTLYLAAGSFIKFH 334
                     5789*********************************************************998888887...999999999999888888886 PP
2GRAS130.12.5e-40331528176373
            GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     ++f++ ++ + +++ +e+L+++ +E+l+Vn  ++  +l+desv  ++  +rd vL+ +++++P+v++ +  + ++ ++sFl  +  al yy++lf
  Pahal.H00101.1 331 IKFHA-IMMKSDKVCIEDLKTDDDEVLVVNDLFNFSTLMDESVFFDHpsPRDIVLNNIRNMRPNVFIQSIVNYSC-GSSFLSWIRGALFYYTSLF 423
                     68999.577899999***************************97776669*****************99999999.679**************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                     d+l+a++pre++ r+ +E+ llg ++ n++aceg +   r e++++W+ r ++aG++++pl+ +++k+ k  +++ + +++ + e+ ++l++gW 
  Pahal.H00101.1 424 DMLDATIPRENQLRVLLEQGLLGHAALNAIACEGVDLMDRPEKYKQWQVRNQRAGLRQLPLKPHIVKELKEKVKQNHHNEFLISEDGQWLLQGWT 518
                     *****************************************************************************999*************** PP

            GRAS 364 drpLvsvSaW 373
                     +++L++ S W
  Pahal.H00101.1 519 GHTLFAHSTW 528
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.254318509IPR005202Transcription factor GRAS
PfamPF035148.5E-38331528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MATTPEEFFA EGLMDPSPPS PVVFLDFLLI PEGCQGPFSP DDTVLSYVSD MLMEEDSGDK  60
LLYQYSDHSA LVQVQQPFAQ ILSPPSSRVD HDNRNRGDMD EIKDLFQNNN GHQSTLDPAF  120
SRGVDAVGAF LRGMEEAKMF LPNDNGFRRD ELVNCMSRES SSHCGVKKRH NRDKHQDEVS  180
RASKAVKMME QEEIGAHKMF NEMMFRGYEI CITSMENLLI SMAMESEKNN RKSTSNKTRD  240
VVNLRTLLVL CAQAVAANNH MSARELLKQI KKHASASGDA TQRLAQCFAK GLEARLVGTG  300
SHLWQLLITE RPSVMEFLQA YTLYLAAGSF IKFHAIMMKS DKVCIEDLKT DDDEVLVVND  360
LFNFSTLMDE SVFFDHPSPR DIVLNNIRNM RPNVFIQSIV NYSCGSSFLS WIRGALFYYT  420
SLFDMLDATI PRENQLRVLL EQGLLGHAAL NAIACEGVDL MDRPEKYKQW QVRNQRAGLR  480
QLPLKPHIVK ELKEKVKQNH HNEFLISEDG QWLLQGWTGH TLFAHSTWVA EDAPSK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791277.10.0scarecrow-like protein 34
TrEMBLA0A2T8IAE50.0A0A2T8IAE5_9POAL; Uncharacterized protein
STRINGPavir.Hb00039.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2543445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-51SCARECROW-like 14