PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00098.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 560aa    MW: 62713 Da    PI: 6.6022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00098.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.4e-951785502373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+av++   + a++lL +++++asp+gd++qRla++f+eAL+arla+ +++ ++ ++      +n +e l+a++lf  ++ + k++++
  Pahal.H00098.1 178 RTLLVHCAQAVDD--RRGARELLRQVKQHASPTGDATQRLAHCFAEALEARLAGAGTGRSSLMA------TNRAEFLKAYRLFMATCCFEKVAFM 264
                     789******9975..899************************************4444443332......34678******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN +I +a++g +r+H++D+++  G+QWp Ll+ La+R++gpp++ iT +++p++g   ++++eetg+ L+++A+ +gvpf+f++++a r++++
  Pahal.H00098.1 265 FANLTICRAAAGRSRLHVVDYGLHLGFQWPDLLRWLAARDGGPPEVTITFIDHPQPGfrPARRIEETGRSLSNYARDIGVPFKFRAIAAARWDTI 359
                     ***************************************************************************************999***** PP

            GRAS 190 eleeL....rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +eeL     v+  g +l+Vn+ ++l++l+d+sv ++s  +rd+vL  +++++P v+++   +  + ++sFl+rf eal yysa+fd l+a++pr
  Pahal.H00098.1 360 GVEELglglGVDDpGAVLVVNSLFKLETLVDDSVVVDSpnPRDRVLGGIRGMRPAVFTHGVVNGFY-GNSFLTRFREALFYYSAVFDLLDATMPR 453
                     ****9444434437*******************98888779********************99999.678************************* PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                      se+r+++Er +lg+ + nv+aceg++r+ r  ++++W+ r ++aG++++pl+ +++ +++  +rk++  + + ++e++g+l++gWk+r L++ S
  Pahal.H00098.1 454 GSEQRRVLERDVLGPCALNVIACEGRDRTDRFDSYKQWQLRSRRAGLRQLPLDREIVGEVRDEVRKHHyHRDFVIDEDHGWLLQGWKGRILYAHS 548
                     ********************************************************************9999*********************** PP

            GRAS 372 aW 373
                      W
  Pahal.H00098.1 549 NW 550
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.678151530IPR005202Transcription factor GRAS
PfamPF035142.6E-92178550IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEEEDRDGR FSCHEDHPAL LHIQQSLAQI ISSSSSSDNA TTNSDIWYAA IEAAGGADHS  60
CISSTDLLTM AFLRGREEAS KLLPRDDRLV ISPEPDTLCA TNGLRVRLPE TEDAETGRAS  120
KKLMAMAAPA EEMIARMMAS DCELPREEME DLRAAMADEA ATRDARRRRR KQQQVDMRTL  180
LVHCAQAVDD RRGARELLRQ VKQHASPTGD ATQRLAHCFA EALEARLAGA GTGRSSLMAT  240
NRAEFLKAYR LFMATCCFEK VAFMFANLTI CRAAAGRSRL HVVDYGLHLG FQWPDLLRWL  300
AARDGGPPEV TITFIDHPQP GFRPARRIEE TGRSLSNYAR DIGVPFKFRA IAAARWDTIG  360
VEELGLGLGV DDPGAVLVVN SLFKLETLVD DSVVVDSPNP RDRVLGGIRG MRPAVFTHGV  420
VNGFYGNSFL TRFREALFYY SAVFDLLDAT MPRGSEQRRV LERDVLGPCA LNVIACEGRD  480
RTDRFDSYKQ WQLRSRRAGL RQLPLDREIV GEVRDEVRKH HYHRDFVIDE DHGWLLQGWK  540
GRILYAHSNW VADDDHHTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-331645515378Protein SCARECROW
5b3h_D4e-331645515378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172ARRRRRKQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827775.10.0scarecrow-like protein 34
TrEMBLA0A2T8IAD20.0A0A2T8IAD2_9POAL; Uncharacterized protein
STRINGPavir.J23608.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-100GRAS family protein