PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02950.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 458aa    MW: 48999.5 Da    PI: 8.9322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18e-07202224223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +CpdCg+ F r+++L+ H+++ H
  Pahal.G02950.1 202 PCPDCGEIFVRQESLQLHQSVrH 224
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-4200220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.995201225IPR007087Zinc finger, C2H2
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
SuperFamilySSF563993.16E-17226455No hitNo description
Gene3DG3DSA:3.90.228.101.6E-11229455IPR012317Poly(ADP-ribose) polymerase, catalytic domain
PROSITE patternPS001970326334IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MVEAAGRSAA AREAKKTTTS AGAAAAMKKK LVMSKKPQKA EKEGSGSLRT KKQSSHRQCR  60
EPESPSYRLA LKSIFSCRNS SGQQHPASAS APESGKKLGC KLKDSESSSS QQRVAEETAG  120
EACKRRASVS GSSERCVKKP LSELPRPNNS KQQLQRGGSS SSSSGGSFRA GMQLRRLSGC  180
YECHMVVDPV SGSSSMRATV CPCPDCGEIF VRQESLQLHQ SVRHAVCELG ADDTSRNIIE  240
IIFQSSWLKK QSPVCKVERI LKVHNTARTL ARFEEYRDAV KAKANKALQA KTTKHPRCSA  300
DGNELLRFHC ATLACALGLN GATHLCDAGG CGACAIIRDG FMIRNASGGG GVRTMATSGR  360
AHDDAVADLD LEERRRAMLV CRVIAGRVKR PPILKEEEAE EGSAAAAEAD ELPHDGDDEL  420
EFDSVAGSAG VYSNLEELQV FNPRAILPCF VVVYKAA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682181e-106EU968218.1 Zea mays clone 316720 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.10.0uncharacterized protein LOC112900370
TrEMBLA0A2S3IBV10.0A0A2S3IBV1_9POAL; Uncharacterized protein
STRINGSi025079m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-98C2H2-like zinc finger protein