PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 229aa MW: 23978.3 Da PI: 7.0969 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.3 | 5.2e-36 | 65 | 123 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r+ k Pahal.G02832.1 65 QQQQLECPRCQSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRGAK 123 6899*************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.0E-32 | 67 | 122 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-21 | 69 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.857 | 69 | 123 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 71 | 107 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAPAAGASTL SATSAGAADA SKRPAASDAE PIGSPVLHHQ ASHGATEDGD EAARKAGLGQ 60 QHPRQQQQLE CPRCQSTNTK FCYYNNYSTA QPRHFCRACR RYWTHGGTLR DVPVGGASRR 120 GAKRRRVSAE PSPSSASSPP QTTARAEDAY RMIPDLSAFP FLSDGSFLPQ LDLGAAPAAT 180 FSSWQQSVVS DFYDGFAPWD DGTAGAAGVT GAWGDIAGLE LSWPPPGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 126 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824347.1 | 1e-166 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A2S3IBM5 | 1e-164 | A0A2S3IBM5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00048.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 5e-26 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02832.1 |