PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 31392.7 Da PI: 6.3194 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 18 | 65 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 g+WT e ++ + +a++ + + +W++Ia+ + g+t+ +++ ++ Pahal.G02817.1 18 GAWTREQEKAFENAIATMAEEadgdaRWEKIAEAVE-GKTADEVRRHYE 65 68*****************99***************.**********95 PP | |||||||
2 | Myb_DNA-binding | 39.8 | 1.1e-12 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Pahal.G02817.1 131 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 175 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.9E-6 | 16 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-5 | 18 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 18 | 65 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.178 | 18 | 68 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.79E-9 | 20 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-7 | 20 | 68 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 124 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-16 | 126 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 128 | 178 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-17 | 128 | 178 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.32E-10 | 131 | 176 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-11 | 131 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-11 | 131 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAVAEASSSG GGGEEGYGAW TREQEKAFEN AIATMAEEAD GDARWEKIAE AVEGKTADEV 60 RRHYELLVED VEGIDAGRVP LPTYAADGGA EEGGGGGGGG GGGKKGSGGG GSHGEKGSAK 120 SAEQERRKGI AWTEDEHRLF LLGLEKYGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN 180 SMNRERRRSS IHDITSVNNG DASAAQGPIT GQTNGQAANR GKPSKQSPQP ANTPPGVDAY 240 GTTIGQPVGG PLVSAVGTPV TLPVPAPPHM AYAMHAPVPG AVVPGAPVNI APMPYPMPPP 300 SSHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-16 | 20 | 89 | 11 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | GGKKGSGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679443 | 0.0 | HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823483.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-102 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2T8IED1 | 0.0 | A0A2T8IED1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00055.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 9e-79 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02817.1 |
Publications ? help Back to Top | |||
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