PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02817.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 305aa    MW: 31392.7 Da    PI: 6.3194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02817.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081865245
                     SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                     g+WT e ++ + +a++ +  +     +W++Ia+ +  g+t+ +++ ++ 
   Pahal.G02817.1 18 GAWTREQEKAFENAIATMAEEadgdaRWEKIAEAVE-GKTADEVRRHYE 65
                     68*****************99***************.**********95 PP

2Myb_DNA-binding39.81.1e-12131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   Pahal.G02817.1 131 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 175
                      6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.9E-61670IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-51865IPR009057Homeodomain-like
PfamPF002491.3E-61865IPR001005SANT/Myb domain
PROSITE profilePS500907.1781868IPR017877Myb-like domain
SuperFamilySSF466891.79E-92074IPR009057Homeodomain-like
CDDcd001671.69E-72068No hitNo description
PROSITE profilePS5129416.605124180IPR017930Myb domain
SuperFamilySSF466892.01E-16126181IPR009057Homeodomain-like
SMARTSM007179.3E-11128178IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.8E-17128178IPR006447Myb domain, plants
CDDcd001673.32E-10131176No hitNo description
Gene3DG3DSA:1.10.10.609.9E-11131174IPR009057Homeodomain-like
PfamPF002493.4E-11131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAVAEASSSG GGGEEGYGAW TREQEKAFEN AIATMAEEAD GDARWEKIAE AVEGKTADEV  60
RRHYELLVED VEGIDAGRVP LPTYAADGGA EEGGGGGGGG GGGKKGSGGG GSHGEKGSAK  120
SAEQERRKGI AWTEDEHRLF LLGLEKYGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRERRRSS IHDITSVNNG DASAAQGPIT GQTNGQAANR GKPSKQSPQP ANTPPGVDAY  240
GTTIGQPVGG PLVSAVGTPV TLPVPAPPHM AYAMHAPVPG AVVPGAPVNI APMPYPMPPP  300
SSHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1620891178RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109GGKKGSGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794430.0HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823483.10.0transcription factor SRM1
SwissprotQ9FNN61e-102SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2T8IED10.0A0A2T8IED1_9POAL; Uncharacterized protein
STRINGPavir.Gb00055.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-79MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]