PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.G02774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 817aa MW: 90861.8 Da PI: 6.3622 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.6e-23 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Pahal.G02774.1 132 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222 99***********************9*****86555544..8************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Pahal.G02774.1 223 KNQLLLGIRRA 233 9999****997 PP | |||||||
2 | Auxin_resp | 112.6 | 3.7e-37 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k Pahal.G02774.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 341 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-48 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 124 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.02E-21 | 131 | 232 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 132 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-24 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-21 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-32 | 258 | 341 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.31E-7 | 711 | 792 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 717 | 801 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 817 aa Download sequence Send to blast |
MSSSSAASIG QPPPAAPPEE EKKCLNSELW HACAGPLVCL PTVGTRVVYF PQGHSEQVAA 60 STNKEVDGHI PNYPNLPPQL ICQLHDVTMH ADVETDEVYA QMTLQPLNPQ EQNDAYLPAE 120 MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP LDFTQQPPAQ ELIARDIHDV 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRASRPQTVM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLSKYIK AVFHTRISVG 300 MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV KVGWDESTAG ERPPRVSLWE 360 IEPLTTFPMY PSLFPLRVKH PWYSGVAALH DDSNALMWLR GVAGEGGFQS LNFQSPGIGS 420 WGQQRLHPSL LSNDHDQYQA VVAAAAASQS GGYLKQQFLH LQQPMQYPQE QCNLNPLLQQ 480 QIMQQASQQQ LVSPDSQNIQ SVLSPSAIQQ QLHQLQQMQH AHNDQKQKIQ SDQPYQVPSS 540 AVLPSPTSLP SHLREKFGFS DPNVNSSSYI SSSSNENMLE SNFLQGSSKC VDLSRFNQPV 600 VSEQQQQQQQ QAWKQKFMGS QSMSFGGSGS LNSPTSKDGS VDSKVGRDVQ NQSLFTTQVD 660 NSSLLYNMVP NLTSNVADNN ISAIPSGSTY LQSPMYGCLD DSSGLLQNTG ENDPTTRTFV 720 KVYKSGSVGR SLDITRFSNY AELREELGQM FGIKGQLDDP DRSGWQLVFV DRENDVLLLG 780 DDPWESFVNS VWYIKILSPE DVHKMGKQGN DPRYLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 21 | 362 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823846.1 | 0.0 | auxin response factor 12 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
TrEMBL | A0A2S3IBG9 | 0.0 | A0A2S3IBG9_9POAL; Auxin response factor | ||||
STRING | Pavir.Ga00205.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.G02774.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|