PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02773.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 696aa    MW: 77623.2 Da    PI: 4.8643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02773.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07112135327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +f++ G C  GdrC+F Hgp
  Pahal.G02773.1 112 MVPCYYFQK-GNCLKGDRCPFYHGP 135
                     789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9812857IPR000571Zinc finger, CCCH-type
SMARTSM003560.00142856IPR000571Zinc finger, CCCH-type
PfamPF156633.9E-123084No hitNo description
PROSITE profilePS5010311.315985IPR000571Zinc finger, CCCH-type
SMARTSM003560.46184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051109136IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6109135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4113135IPR000571Zinc finger, CCCH-type
PfamPF146080.27114134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEVDGAAEAG TVAAASGAKP LTPEEEALRR STDCVYFLAS PLTCKKGNEC DFRHSEGARM  60
NPRDCWYWLN GSCLNPKCSF RHPPIDGLFG APTPGIPPVS SHYGAYSSGK QMVPCYYFQK  120
GNCLKGDRCP FYHGPQAAGN NPTDQAAKVS SLPLELPQAK KNEESAAPNN LTQQGARIID  180
DRTMVHIAKS GVGATPTELA SNAVKSRPNS EQAPNSMPAA KKSFTIEEDH PMHYQNQLPV  240
EGDSVQDWNQ NFQMPATDDL PQNSREAEDF LGESSPGFDV LVDNDADGAA YLHDEEDFGR  300
DMYPVEDYEY APADFDTQAH PESEQFNGMG KNGQIGQLYD GYDRKRLRSS SERSIDRPFH  360
PDRRFHHRGL DRDEIDGSDL RHQLRRRRIR GSSTAVSPER ANGGRHWRDE CYRERAHGGH  420
HMHNDRRQGP RGSTLSSRLQ ARIKLPGRSP DRVEARFEDE RDRRRFSPAR WADFHGGRNW  480
EPGQHQERSH RISSELVSSV RHADGLSIRR DAVDSAHFPA RRNLGEPRKA NGIVESEASL  540
DFEGPKPFSV ILQRKREAAG GNNSSFSYEK SAEVTVMQAG SLAESEKKGC DNNIMSEDCK  600
SGLGDEEYKE EDHIPVEGHG QSSSHGDKFE VEDAAEVDPE GNQEADNYDE REGESDDYET  660
IEGHDYKSED ENAYQEDEDL DDDDDFAQKV GVVFS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2S3IBG40.0A0A2S3IBG4_9POAL; Uncharacterized protein
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]