PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02723.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 302aa    MW: 31371.6 Da    PI: 9.6838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02723.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08105130227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C  +     Ck+Gd+C+FaH++
  Pahal.G02723.1 105 KTRMCTKYNTAEGCKFGDKCHFAHSE 130
                     89**********************95 PP
2zf-CCCH36.96.3e-12268293127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+lC +f + GtC +G+rC+FaHg+
  Pahal.G02723.1 268 YKTKLCENFVK-GTCTFGERCHFAHGE 293
                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53862IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-13101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8102134IPR000571Zinc finger, CCCH-type
SMARTSM003560.14103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638103131IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-5105130IPR000571Zinc finger, CCCH-type
SMARTSM003229.4E-11171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.5E-15171241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257172236IPR004088K Homology domain, type 1
SuperFamilySSF547918.77E-15174265IPR004088K Homology domain, type 1
PfamPF000137.2E-11174237IPR004088K Homology domain, type 1
CDDcd001053.99E-14174236No hitNo description
Gene3DG3DSA:4.10.1000.105.4E-15266297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9266297IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.384267294IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGAAAARKR SRPETANGAA AGGKRSKEME SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP VVSAPARAPA DHAAVANSHP ASMAKTRMCT KYNTAEGCKF  120
GDKCHFAHSE RELGKPAYMS HEAPPMGGRF GGRPEPPPPV AMGPPAGNFG ASATAKISVD  180
ASLAGGIIGK GGVNTKQICR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI  240
ATISASMPPK NPAPAGGRGG APGGRSNYKT KLCENFVKGT CTFGERCHFA HGEDEQRRGA  300
A*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822781.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-160C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A2S3IBB80.0A0A2S3IBB8_9POAL; Uncharacterized protein
STRINGPavir.J40951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-53C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]