PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02703.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 344aa MW: 37107.6 Da PI: 6.5842

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02703.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	295	318	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Pahal.G02703.4 295 TKPCAYFNSARGCRNGANCTFLHD 318 899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.657	292	320	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-5	294	321	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-6	295	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.6E-5	295	318	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MFGALEAIYP RPSNIPPNPF VSPDVKDSYF DDSQTQLVPL IPVEEDDASD QLEEQSVGPP 60 NSYHQSDKYD SATVRVPQAS DAPFTTAQQQ PNGSINTASA GGISSEPDAV AAASAAYTAI 120 MQSNQMGNMI DQDLLIKILS DPAQLERLMK EYGTLKHEQP INSSAPAPML PGLPPQMTAS 180 APVPFPDHMT TFHNINPGLP PPPPVMNRLP PAIPSVGMNP PASSSQAINF SNVPGRGINY 240 YKTLIHQHGG ERQEPLQQHG MQFGMHHHSV PSQTSTIDVI SNGTMPGREI KQRPTKPCAY 300 FNSARGCRNG ANCTFLHDVS AARKEQPKGS KRIKLDSRIA GRY*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MFGALEAIYP RPSNIPPNPF VSPDVKDSYF DDSQTQLVPL IPVEEDDASD QLEEQSVGPP  60
NSYHQSDKYD SATVRVPQAS DAPFTTAQQQ PNGSINTASA GGISSEPDAV AAASAAYTAI  120
MQSNQMGNMI DQDLLIKILS DPAQLERLMK EYGTLKHEQP INSSAPAPML PGLPPQMTAS  180
APVPFPDHMT TFHNINPGLP PPPPVMNRLP PAIPSVGMNP PASSSQAINF SNVPGRGINY  240
YKTLIHQHGG ERQEPLQQHG MQFGMHHHSV PSQTSTIDVI SNGTMPGREI KQRPTKPCAY  300
FNSARGCRNG ANCTFLHDVS AARKEQPKGS KRIKLDSRIA GRY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823312.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	1e-108	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2S3IB97	0.0	A0A2S3IB97_9POAL; Uncharacterized protein
TrEMBL	A0A2S3IBG2	0.0	A0A2S3IBG2_9POAL; Uncharacterized protein
STRING	Pavir.Ga00146.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pahal.G02703.4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]