PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02703.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 410aa MW: 44439.9 Da PI: 6.0401

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02703.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.8e-06	361	384	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Pahal.G02703.2 361 TKPCAYFNSARGCRNGANCTFLHD 384 899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.657	358	386	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-5	360	387	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-6	361	386	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-5	361	384	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MHAAGPSSDD SLPPGFESLQ PTNNHKIDIS QIPLVRWRCP PQILYNPDWL VVAGEESVEV 60 GLQNERMFGA LEAIYPRPSN IPPNPFVSPD VKDSYFDDSQ TQLVPLIPVE EDDASDQLEE 120 QSVGPPNSYH QSDKYDSATV RVPQASDAPF TTAQQQPNGS INTASAGGIS SEPDAVAAAS 180 AAYTAIMQSN QMGNMIDQDL LIKILSDPAQ LERLMKEYGT LKHEQPINSS APAPMLPGLP 240 PQMTASAPVP FPDHMTTFHN INPGLPPPPP VMNRLPPAIP SVGMNPPASS SQAINFSNVP 300 GRGINYYKTL IHQHGGERQE PLQQHGMQFG MHHHSVPSQT STIDVISNGT MPGREIKQRP 360 TKPCAYFNSA RGCRNGANCT FLHDVSAARK EQPKGSKRIK LDSRIAGRY*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MHAAGPSSDD SLPPGFESLQ PTNNHKIDIS QIPLVRWRCP PQILYNPDWL VVAGEESVEV  60
GLQNERMFGA LEAIYPRPSN IPPNPFVSPD VKDSYFDDSQ TQLVPLIPVE EDDASDQLEE  120
QSVGPPNSYH QSDKYDSATV RVPQASDAPF TTAQQQPNGS INTASAGGIS SEPDAVAAAS  180
AAYTAIMQSN QMGNMIDQDL LIKILSDPAQ LERLMKEYGT LKHEQPINSS APAPMLPGLP  240
PQMTASAPVP FPDHMTTFHN INPGLPPPPP VMNRLPPAIP SVGMNPPASS SQAINFSNVP  300
GRGINYYKTL IHQHGGERQE PLQQHGMQFG MHHHSVPSQT STIDVISNGT MPGREIKQRP  360
TKPCAYFNSA RGCRNGANCT FLHDVSAARK EQPKGSKRIK LDSRIAGRY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823312.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	1e-147	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2S3IB97	0.0	A0A2S3IB97_9POAL; Uncharacterized protein
TrEMBL	A0A2S3IC22	0.0	A0A2S3IC22_9POAL; Uncharacterized protein
STRING	Pavir.Ga00146.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pahal.G02703.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]