PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02703.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 458aa MW: 49754.9 Da PI: 6.7026

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02703.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	409	432	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Pahal.G02703.1 409 TKPCAYFNSARGCRNGANCTFLHD 432 899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.657	406	434	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-5	408	435	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-6	409	434	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	409	432	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MMGSRRSRRV SWAAGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL 60 PPGFESLQPT NNHKIDISQI PLVRWRCPPQ ILYNPDWLVV AGEESVEVGL QNERMFGALE 120 AIYPRPSNIP PNPFVSPDVK DSYFDDSQTQ LVPLIPVEED DASDQLEEQS VGPPNSYHQS 180 DKYDSATVRV PQASDAPFTT AQQQPNGSIN TASAGGISSE PDAVAAASAA YTAIMQSNQM 240 GNMIDQDLLI KILSDPAQLE RLMKEYGTLK HEQPINSSAP APMLPGLPPQ MTASAPVPFP 300 DHMTTFHNIN PGLPPPPPVM NRLPPAIPSV GMNPPASSSQ AINFSNVPGR GINYYKTLIH 360 QHGGERQEPL QQHGMQFGMH HHSVPSQTST IDVISNGTMP GREIKQRPTK PCAYFNSARG 420 CRNGANCTFL HDVSAARKEQ PKGSKRIKLD SRIAGRY*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MMGSRRSRRV SWAAGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL  60
PPGFESLQPT NNHKIDISQI PLVRWRCPPQ ILYNPDWLVV AGEESVEVGL QNERMFGALE  120
AIYPRPSNIP PNPFVSPDVK DSYFDDSQTQ LVPLIPVEED DASDQLEEQS VGPPNSYHQS  180
DKYDSATVRV PQASDAPFTT AQQQPNGSIN TASAGGISSE PDAVAAASAA YTAIMQSNQM  240
GNMIDQDLLI KILSDPAQLE RLMKEYGTLK HEQPINSSAP APMLPGLPPQ MTASAPVPFP  300
DHMTTFHNIN PGLPPPPPVM NRLPPAIPSV GMNPPASSSQ AINFSNVPGR GINYYKTLIH  360
QHGGERQEPL QQHGMQFGMH HHSVPSQTST IDVISNGTMP GREIKQRPTK PCAYFNSARG  420
CRNGANCTFL HDVSAARKEQ PKGSKRIKLD SRIAGRY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823312.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	0.0	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2S3IB97	0.0	A0A2S3IB97_9POAL; Uncharacterized protein
STRING	Pavir.Ga00146.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8680	10	13

Link Out ? help Back to Top
Phytozome	Pahal.G02703.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]