PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02668.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 325aa    MW: 35609 Da    PI: 4.4529
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02668.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.5e-15148236397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     fqr ws +De+ +L +l  ++ ++g+ p+ d  a+   + +s++   +s   l  K++ LK+++++  kk   g+    sk+hd+  f+lsk+iW
  Pahal.G02668.1 148 FQRTWSTDDEVRILEALAAYRLEHGALPQPD--ALATVLAGSLDNSgYSPALLQGKVKALKRRYTMAAKK---GER--PSKDHDRRLFDLSKSIW 235
                     9************************888776..6778889999755277777889*************99...555..5799************* PP

          DUF573  97 g 97 
                     g
  Pahal.G02668.1 236 G 236
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.3E-19148236IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAPKRSAPPP PPPPPASDEE TASGSGSEEE EEEEEIAYSP PPSVAPKTTA PPLHKGQESE  60
DSEEDEEEEE EEEEEEEEEN ANHVAPPPAT KNPSPPPPNR EESESSGDEE EEETDGEAPQ  120
QKHAPSHEAE RKGAKPSSGD DKKPGAPFQR TWSTDDEVRI LEALAAYRLE HGALPQPDAL  180
ATVLAGSLDN SGYSPALLQG KVKALKRRYT MAAKKGERPS KDHDRRLFDL SKSIWGPVTA  240
AANGGAPREA SEMCELYPYL AEEVKALQKA HPGMFKREFA MIDDDKARAL DTKIKRQRLH  300
QLKVLQRGHD LTKEVTRTLI DLVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297KIKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.21e-118uncharacterized protein LOC101755591
TrEMBLA0A2S3GTM40.0A0A2S3GTM4_9POAL; Uncharacterized protein
STRINGPavir.Aa00346.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-12DNA-binding storekeeper protein-related transcriptional regulator